Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00573 ATGGAGACTCCTCCTCCCCAACAAGGCGTCGTGAAGAAGAAGGAGACAAGGGGCCGAAAACCCAAACCAAAGGACGAACACGGGAAGGGTTTGAAGGaaggtaggaaaacacaacaacaacaacaacatcatcatcagcagcagcaacagcaacaagatcaaccttcggtggACGAGAAATACACGCAGTGGAAGTCCCTTGTTCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTCGTCTGGCCCTCTCTCTCTTGCAGGTGGGGCCCCCAGCTTGAACAAGCCACTTACAAGAATCGCCAGAGACTCTACCTTTCTGAGCAGGCAAAGCAACTTAACTCTCTTTTTATTTTTATTTTTAAACTTTTTTTTAATTTTGTGCCGAATACTCTGGTGATTGCGAATTGCGAGGTTGTGAAGCCTAGGGTTGCTGCTGCTGAGCACATTTCGCAGTTTAATGAAGAGGCGCGGTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGTGAGGTAAACAGAATTAGGGAATTGCCACAAAATTCCAAGATAGTGGCTACACATACAGACAGCCCTGATGTCCTTGTTTGGGATGTTGAAAGTCAACCTAATCGCCATGCTGTCCTTGGAGCTACAAACTCTCGTCCTGATTTGATATTGACCGGACACCAAGATAATGCGGAATTTGCTCTTGCTATGTGCCCAACTGAACCCTATGTTCTTTCAGGAGGAAAGGACAAAACAGTGGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCTACAGACTCCAAATCTGGTGGGTCAATTATCAAACAAAACTCTAAATCTGGAGAAGGCAATGACAAAACTGCTGATGGCCCTACTGTTGGACCACGAGGTATCTATTGTGGGCATGAGGATACTGTTGAAGACGTGGCTTTCTGCCCATCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAGAAAGCTCATAATGCTGATCTTCACTGTGTGGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGGTCACCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCTGAAGATGGTCTCTTAAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCAATAAGTTCTCCTCCAGGGTTGTTTTTTCAACATGCAGGTCATAGGGATAAAGTTGTTGACTTCCATTGGAATGCATATGATCCATGGACGATTGTTAGTGTGTCTGATGACTGTGAAAGTACTGGAGGAGGGGGAACGTTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGATGAGGTTTTGGCCGAGCTGGAGAAATTCAAATCTCATGTTGTGGCGTGTGCTTCAAAGACTGAAAAATGA 1572 0.4307 METPPPQQGVVKKKETRGRKPKPKDEHGKGLKEGRKTQQQQQHHHQQQQQQQDQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQAKQLNSLFIFIFKLFFNFVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATDSKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVACASKTEK 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00573 523 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 59 121 IPR022052 -
Gma09g00573 523 MobiDBLite consensus disorder prediction 19 40 - -
Gma09g00573 523 MobiDBLite consensus disorder prediction 265 285 - -
Gma09g00573 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 341 IPR001680 GO:0005515
Gma09g00573 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 377 IPR001680 GO:0005515
Gma09g00573 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 428 IPR001680 GO:0005515
Gma09g00573 523 SUPERFAMILY WD40 repeat-like 160 514 IPR036322 GO:0005515
Gma09g00573 523 MobiDBLite consensus disorder prediction 41 58 - -
Gma09g00573 523 Pfam WD domain, G-beta repeat 387 426 IPR001680 GO:0005515
Gma09g00573 523 Pfam WD domain, G-beta repeat 345 377 IPR001680 GO:0005515
Gma09g00573 523 Pfam WD domain, G-beta repeat 297 332 IPR001680 GO:0005515
Gma09g00573 523 Pfam WD domain, G-beta repeat 220 255 IPR001680 GO:0005515
Gma09g00573 523 MobiDBLite consensus disorder prediction 1 58 - -
Gma09g00573 523 Gene3D - 34 509 IPR015943 GO:0005515
Gma09g00573 523 MobiDBLite consensus disorder prediction 265 292 - -
Gma09g00573 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 428 - -
Gma09g00573 523 PANTHER WD40 REPEAT FAMILY 33 520 - -
Gma09g00573 523 SMART WD40_4 215 255 IPR001680 GO:0005515
Gma09g00573 523 SMART WD40_4 292 332 IPR001680 GO:0005515
Gma09g00573 523 SMART WD40_4 444 491 IPR001680 GO:0005515
Gma09g00573 523 SMART WD40_4 386 426 IPR001680 GO:0005515
Gma09g00573 523 SMART WD40_4 337 377 IPR001680 GO:0005515
Gma09g00573 523 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 33 520 - -
Gma09g00573 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00573 Gma-Chr9 6171362 6178546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00573 301 486 Miscellaneous Gene Families AT5G08390 25.389 2.90e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00573 K10752 - gmx:100779302 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00573 09 6171362 6178546 Gma09g00573 09 6171362 6178546 ECH
Gma15g01585 15 15419113 15427219 Gma09g00573 09 6171362 6178546 GST