Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00530 ATGCCTGAAATGGATCTGGTTCCGAATTCTGTGACTTACTGCACAATGATTGATGGGTATTGCAAGGTAGGTAGAATTGACGAGGCACTTGAGGTATTTGATGAATTTAGAAAGACTTCAATCTTGTCACTTGCGTGCTACAATACCATTATTAATGGCCTTTGCAAGAATGGTATGACAGAAATGGCCATTGAGGCTTTGCTTGAACTCAATCATGAAGGTCTTGAGTTGGATCCAGTCACTTTTCTTGCCTCTACTCTCAAGATTTTCATAAAGGAGAGTAGAGCTTTAGATGCATATAGGCTTGTCACAGAGACTCAAGATCATTTACCAGTCATGGAGGGATTTTTGTTAGATGCAGAGCATGTTTATAGGAAAATGGTCCTCAAGGGCTTTCAGCCAAAAGCACAAGTTTACAATTCATTACTTGATGGAATTTCTAAGTTTGGTCAACTAGAAAAGGCATTTGAGCTTCTAAATGATATGGAGACAAAATATATTGAGCCTGACAGTCTGACTATTAGTGCTGTAATTAATTGTTATTGCCAAAAGGGCAACATGCATGGAGCTCTTGAATTCTATTATAAGTTCAAGAGGAAGGATATGTCACCTGATTTTTTTGGGTTCTTGTATTTGATAAGAGGTCTATGTACCAAGGGAAGGATGGAAGAAGCCAGGAGTGTCTTGAGAGAAATGCTCCAGTCCAAGAATGTGGTAGAGTTAATTAACACAGTCAACAAGGAGGTTGATACTGAATCAATAAGTGATTTCCTTGCCACTTTGTGTGAGCAAGGAAGGGTTCAAGAGGCTGTTACAGTTCTCAATCAAATTGCATGCCTACTTTTTCCTGTTCAAAGGTTGTCCACTTATTATCAAGGATTCCATAAACAACAGAAGATTTATGAATGGAAGGATTTTGGTTCAATATCTTCAAGCATTCTACCTTCCTCTTGCCAAAGTAGTTTGAATCTTGGATCTTGCGATGACAAAGATGTTAGGAATCTTATAACAAGTAATGGTGGTTATATGACAAGATCCCAGCTGCATGGCTTTGACTTCTATTATTCTAGAATGGCCCCACTTTGTGCCAAAGGGGAACTGCAGAAAGCTAATCAATCAGCAAAAGAATTTCTTTCTGACCTGACAGAGTCTATGAACTGA 1161 0.3867 MPEMDLVPNSVTYCTMIDGYCKVGRIDEALEVFDEFRKTSILSLACYNTIINGLCKNGMTEMAIEALLELNHEGLELDPVTFLASTLKIFIKESRALDAYRLVTETQDHLPVMEGFLLDAEHVYRKMVLKGFQPKAQVYNSLLDGISKFGQLEKAFELLNDMETKYIEPDSLTISAVINCYCQKGNMHGALEFYYKFKRKDMSPDFFGFLYLIRGLCTKGRMEEARSVLREMLQSKNVVELINTVNKEVDTESISDFLATLCEQGRVQEAVTVLNQIACLLFPVQRLSTYYQGFHKQQKIYEWKDFGSISSSILPSSCQSSLNLGSCDDKDVRNLITSNGGYMTRSQLHGFDFYYSRMAPLCAKGELQKANQSAKEFLSDLTESMN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00530 386 Gene3D Tetratricopeptide repeat domain 1 112 IPR011990 GO:0005515
Gma09g00530 386 Pfam PPR repeat 5 35 IPR002885 -
Gma09g00530 386 Pfam PPR repeat 201 232 IPR002885 -
Gma09g00530 386 Pfam PPR repeat family 137 183 IPR002885 -
Gma09g00530 386 Pfam PPR repeat family 45 82 IPR002885 -
Gma09g00530 386 TIGRFAM PPR: pentatricopeptide repeat domain 46 78 IPR002885 -
Gma09g00530 386 TIGRFAM PPR: pentatricopeptide repeat domain 173 205 IPR002885 -
Gma09g00530 386 TIGRFAM PPR: pentatricopeptide repeat domain 11 40 IPR002885 -
Gma09g00530 386 TIGRFAM PPR: pentatricopeptide repeat domain 138 170 IPR002885 -
Gma09g00530 386 TIGRFAM PPR: pentatricopeptide repeat domain 212 236 IPR002885 -
Gma09g00530 386 SUPERFAMILY TPR-like 20 234 IPR011990 GO:0005515
Gma09g00530 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Gma09g00530 386 PANTHER ATPASE EXPRESSION PROTEIN 3 114 383 - -
Gma09g00530 386 PANTHER ATPASE EXPRESSION PROTEIN 3 1 87 - -
Gma09g00530 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Gma09g00530 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Gma09g00530 386 PANTHER FERTILITY RESTORER-LIKE 114 383 - -
Gma09g00530 386 PANTHER FERTILITY RESTORER-LIKE 1 87 - -
Gma09g00530 386 Gene3D Tetratricopeptide repeat domain 113 326 IPR011990 GO:0005515
Gma09g00530 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00530 Gma-Chr9 5510734 5512534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00530 29 379 Glycosyltransferase AT1G05670 22.161 8.15e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00530 - K17964 gmx:100783405 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01534 15 14455086 14458280 Gma09g00530 09 5510734 5512534 GST