Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00504 ATGGAGGGTACCCTTTTCCCCAATAGGCCAGTCTTACCTGTTCCTTCACACAAACCAACACAACCACCTTTGAAATTCAAGCCAACTTTTTTACCTCCACAATCTCCACCACCATCACCACCTCCTTCTTTTCAGTTAGATTCCCTTCTCCAACACCTTCAGCATCTCTCTTCAGTTCCAATCACCACTCACACCCTCACAATTGTGCCTCCTTCTCATGACAACACAAAAAATTTTAACAAGTCAGTTAATTCAAAGCACCCCACTTTAGGTTCTGACCCCATCATTGATGAGGACCAGTTTGATGATGCAAAGTTTCGATTTTTATCTGACAAGGGTAAGTTGCTGCTCAATTCAGTTGTTGGATCACCTTTGCATGAACTGAATGACTTTTTCAACTCTGTTAAGTTTGAGTTGCTTGAGGCTGATTTTCCCAGCTTGTTGAAGGCTTTGGACCTTTCTGGGAACTGGGAAAGGGCACTCTTGCTGTTTGAATGGGGTTGGTTGCATTTTGGGAGTGATCAGAATTTGAGGTTGGACAACCAGGTAGTTGAATTGATGGTTAGGATACTGGGGAGGGAGTCACAACATTCAATTGCATCCAAGTTGTTTGATTTAATTCCTGTCGAAAAATACTCCCTTGATGTCCGGGCTTACACAACCATTCTCCATGCGTATGCTCGCTCCGGGAAGTATAAACGGGCTATTGACTTGTTTGATAAGATGGAGGGGATTGGTCTTGATCCAACTTTGGTCACTTACAATGTTATGCTTGATGTTTACGGCAAGATGGGTCGATCTTGGGGTAGAATCTTGGAGTTGTTGGATGAGATGAGAAGTAAAGGGCTTGAATTTGATGAGTTTACTTGCAGCACTGTGATTTCTGCTTGTGGGAGAGAGGGTATGCTGGATGAAGCAAGGAAGTTTTTGGCTGAATTGAAATTGAATGGCTATAAACCAGGAACCGTTATGTATAATTCTATGCTGCAGGTTTTTGGAAAGGCTGGAATTTACACCGAGGCCTTGAGCATCTTGAAAGAAATGGAGGATAATAATTGCCCTCCTGATTCTATTACTTACAATGAGCTCGCGGCAACTTATGTAAGAGCTGGGTTTCTCGACGAAGGGATGGCTGTCATAGATACAATGACAAGCAAAGGGGTTATGCCAAATGCTATTACTTATACCACTGTAATCGATGCCTATGGTAAGGCAGGAAGGGAGGATGACGCATTAAGGTTGTTCAGCAAGATGAAGGACTTGGGTTGTGCTCCCAATGTATACACTTACAACTCTGTTCTTGCCATGCTAGGCAAGAAGTCAAGAACGGAAGATGTTATTAAGGTTCTCTGTGAGATGAAATTGAATGGATGTGCTCCTAATCGTGCTACGTGGAACACCATGCTTGCTGTATGTAGTGAGGAGGGTAAGCACAATTATGTTAACAAGGTCTTGAGGGAAATGAAAAACTGTGGATTTGAGCCTGACAAAGACACATTCAATACATTGATTAGTTCATATGCTCGGTGCGGATCTGAAGTTGATTCTGCAAAAATGTATGGGGAAATGGTTAAATCAGGCTTTACTCCATGTGTAACAACTTATAATGCTCTTCTAAATGCCTTGGCTCATCGAGGTGATTGGAAAGCAGCAGAATCTGTCATTCAGGACATGCAGACCAAGGGCTTTAAGCCCAACGAAACTTCGTACTCACTGTTGCTCCATTGTTATTCCAAGGCTGGGAATGTCAGGGGGATAGAGAAGGTTGAGAAAGAAATTTATGATGGTCAGGTCTTTCCTAGCTGGATACTTTTGAGAACCCTTGTCCTATCAAACCACAAGTGCAGACACCTTAGGGGAATGGAAAGGGCATTTGATCAACTTCAAAAGTATGGATACAAACCGGATTTGGTTGTCATTAATTCCATGCTTTCGATGTTTTCCCGAAACAAGATGTTTTCGAAGGCCCGTGAAATGCTGCATTTCATTCACGAATGTGGATTGCAGCCAAATCTTTTCACCTACAATTGCTTGATGGATCTGTATGTCCGAGAGGATGAGTGTTGGAAAGCAGAAGAAGTGCTCAAGGGAATTCAAAACTCCGTACCGGAGCCAGATGTTGTGTCTTACAATACTGTTATCAAGGGATTCTGCAGAAAAGGGCTCATGCAGGAAGCTATTAGAGTTCTCTCAGAAATGACCACTAAGGGGATTCAACCAACTTTAGTTACATACAATACTTTCTTGTCAGGCTATGCAGGGATGGAGTTGTTTGATGAAGCAAATGAAGTCATTAGATTTATGATTGAGCACAATTGCAGGCCAAGTGAACTAACTTACAAGATTCTAGTTGATGGTTATTGTAAAGCAGGGAAGCATGAAGAAGCCATGGACTTTGTGACTAAGATTAAGGAGATTGATATCTCTTTTGATGATAAATCTGTGAAAAGACTAGGCTTTTGGACCTTTATTCAAGGCTTTTACTTCCTACACCTGCTTCATTTTGCTTCCTGCACCCCCATTGCACAAAAATACCCTCACTTTCTCCAACGACACCCCCATGCCAGAGAAGCTCCACTATATGTTTGCGCCACTATTGATGCCGCATCCGAAGGCTATGGCAAAAAAATGCTTGCAACAAGAAGATCGAAAAACAAAACCTTCAACATCACACTTGGAGTGACTCAATCTACGCTCGAGAGCGAGATCAATGGGGATGGGATTGAGGTCGATTGGGTCAATGTTGTGAACTCAGAGCCCTAG 2763 0.426 MEGTLFPNRPVLPVPSHKPTQPPLKFKPTFLPPQSPPPSPPPSFQLDSLLQHLQHLSSVPITTHTLTIVPPSHDNTKNFNKSVNSKHPTLGSDPIIDEDQFDDAKFRFLSDKGKLLLNSVVGSPLHELNDFFNSVKFELLEADFPSLLKALDLSGNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTLVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKHEEAMDFVTKIKEIDISFDDKSVKRLGFWTFIQGFYFLHLLHFASCTPIAQKYPHFLQRHPHAREAPLYVCATIDAASEGYGKKMLATRRSKNKTFNITLGVTQSTLESEINGDGIEVDWVNVVNSEP 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00504 920 MobiDBLite consensus disorder prediction 12 43 - -
Gma09g00504 920 Gene3D Tetratricopeptide repeat domain 120 266 IPR011990 GO:0005515
Gma09g00504 920 Gene3D Tetratricopeptide repeat domain 469 599 IPR011990 GO:0005515
Gma09g00504 920 MobiDBLite consensus disorder prediction 1 43 - -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 285 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Gma09g00504 920 Gene3D Tetratricopeptide repeat domain 601 700 IPR011990 GO:0005515
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 741 775 IPR002885 -
Gma09g00504 920 Gene3D Tetratricopeptide repeat domain 385 456 IPR011990 GO:0005515
Gma09g00504 920 Gene3D Tetratricopeptide repeat domain 267 313 IPR011990 GO:0005515
Gma09g00504 920 Gene3D Tetratricopeptide repeat domain 314 384 IPR011990 GO:0005515
Gma09g00504 920 Gene3D Tetratricopeptide repeat domain 701 822 IPR011990 GO:0005515
Gma09g00504 920 Pfam PPR repeat family 635 681 IPR002885 -
Gma09g00504 920 Pfam PPR repeat family 460 509 IPR002885 -
Gma09g00504 920 Pfam PPR repeat family 320 361 IPR002885 -
Gma09g00504 920 Pfam PPR repeat family 530 578 IPR002885 -
Gma09g00504 920 Pfam PPR repeat family 705 753 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Gma09g00504 920 PANTHER - 1 819 - -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 708 741 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 393 427 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 218 243 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 428 461 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 743 777 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 499 530 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 779 804 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 358 392 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 464 496 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 534 567 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 638 671 IPR002885 -
Gma09g00504 920 TIGRFAM PPR: pentatricopeptide repeat domain 288 321 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Gma09g00504 920 Pfam PPR repeat 288 317 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 776 810 IPR002885 -
Gma09g00504 920 Pfam PPR repeat 772 802 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 706 740 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Gma09g00504 920 Pfam Pentatricopeptide repeat domain 379 439 IPR002885 -
Gma09g00504 920 Pfam Pentatricopeptide repeat domain 214 264 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Gma09g00504 920 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Gma09g00504 920 PANTHER OS03G0856100 PROTEIN 1 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00504 Gma-Chr9 5143590 5147112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00504 161 811 Glycosyltransferase AT1G05670 22.239 6.71e-46 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00504 K17710 - gmx:100806053 1614.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01513 15 14057826 14060524 Gma09g00504 09 5143590 5147112 GST