Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00420 ATGAGTCAGGAATCGTTTATATATAGCTTCGTGGCTCGTGGGACGATGCTGTTAGCAGAGTACACGGAGTTCACTGGAAACTTCCCTGCCATTGCAGCTCAGTGTCTTCAGAAGCTTCCATCTTCCAACAACAAGTTCACTTACAACTGTGACCACCACACCTTCAATTTCCTTGTTGAAGATGGTTATGCTTACTGTGTTGTTGCTAAGGAATCTGTTAGCAAGCAGATCTCTATTGCTTTCCTTGAACGTGTCAAGGCTGATTTTAAGAAAAGATATGGGGGTGGAAAAGCAGATACAGCCATTGCCAAGAGTCTGAACAAGGAGTTTGGACCAGTTATGAAGGAGCACATGAAGTATATCATCAATCATGCTGAAGAGATTGTAAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAAAGTATCATGTTAGAAAATATAGACAAGGCCCTTGATAGAGGAGAAAATCTAACTATTCTTGCGGATAAGACGGAGGCATTGCGTTCACATGCTCAAGATTTCAGAAAGCAAGGAACACAAGTTCGTCGGAAGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTTCTGGGAATATTGTTGGTTTTGGTCTTGCAGTCGCTTCCGCCATTCTCATCAGATGAGGTTTATGGAGTGTGGGATCTTCATGCAAATCTTCCAGCACCTCATGTACTGGCAGACATGTTAGTGAGTGGCTTTGGCAGCAACGTCGACGATGCTTGGCGCGCGGAAGAAGAGAAAATCTGA 774 0.4264 MSQESFIYSFVARGTMLLAEYTEFTGNFPAIAAQCLQKLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERVKADFKKRYGGGKADTAIAKSLNKEFGPVMKEHMKYIINHAEEIVKLIKVKAQVSEVKSIMLENIDKALDRGENLTILADKTEALRSHAQDFRKQGTQVRRKMWYQNMKIKLVVLGILLVLVLQSLPPFSSDEVYGVWDLHANLPAPHVLADMLVSGFGSNVDDAWRAEEEKI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00420 257 Pfam Regulated-SNARE-like domain 32 110 IPR010908 -
Gma09g00420 257 SUPERFAMILY SNARE fusion complex 129 192 - -
Gma09g00420 257 Pfam Synaptobrevin 130 207 IPR042855 -
Gma09g00420 257 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Gma09g00420 257 PANTHER SNARE PROTEINS 1 207 - -
Gma09g00420 257 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Gma09g00420 257 SMART Longin_2 31 113 IPR010908 -
Gma09g00420 257 Gene3D Longin domain 1 118 - -
Gma09g00420 257 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016021|GO:0016192
Gma09g00420 257 Gene3D - 119 194 - -
Gma09g00420 257 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Gma09g00420 257 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016021|GO:0016192
Gma09g00420 257 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Gma09g00420 257 CDD Longin 7 120 IPR010908 -
Gma09g00420 257 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Gma09g00420 257 CDD R-SNARE 130 188 - -
Gma09g00420 257 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 724 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00420 Gma-Chr9 3952389 3956618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00420 1 200 Miscellaneous Gene Families AT1G04760 70.000 2.00e-107 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00420 K08511 - gmx:100786244 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00420 09 3952389 3956618 Gma09g00420 09 3952389 3956618 ECH
Gma17g00237 17 1930804 1933244 Gma09g00420 09 3952389 3956618 PCT
Gma09g00420 09 3952389 3956618 Gma17g00237 17 1930804 1933244 PCT