Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00377 ATGGCCTCTCCTAAGAGAATTGGTGTTCTAATTTTGTGCTTTGCACTGGTTTGCTATGTGGATGCTAAACCAAAAACAAAGCCATTTGCTAGTCCTGATATCTACAAGGGTAAAAATGTAGCTAAGGATGAAATTTCTCCTGGCGAGAAGATAGTTAATGTCATGAGCTTTGGAGCCATACCTGATGGCAAGTTTGACTGCACTCAGGCTTTCATGCATGCATGGAGAGCAGCATGCAAGTCCAATGTGCAAGCCAGGCTTCTGATCCCTAAGGGAAGATTCGTCGTTTCCACGATGTTTTTCGCAGGACCGTGTTTGACTCCAGGGCCTATTACAATCCAAGTTGTAGGCACTGTTGCGGCTACAACAGACATCAGTGAGTATGCGAATGGTGAATGGCTCATGTTTGAGGAACTGGATGGTATAAAGCTTATCGGTGGTGGTACTTTTGATGGCATGGGTAAGGGATCATGGGCAACTGCTGAGAACTGTGAAGCAGATGAATCCAACAATTGCGTCAGAAACCCTAGTAGTATTTATTTCCACAATGTGAGGAATGGAATTATACAGAACATCAAATCCGTAGACCCCAAAGGCTTTCATCTTTTTGTCACTAGCTGTGCTAACATCAGACTCCGATTACTTAAGCTCACTGCACCAGCTACCAGCCCCAACACCGATGGAATTCATATTAGCAACTCCATCGATGTAAAATTATCCAAAAATATCATTGAAACTGGAGATGATTGTGTTTCCATGATACAAGGAGTCAACAATGTTACTATCAACAAACTGAAATGTGGCCCTGGACACGGTATCAGTATTGGAAGTCTTGGAAAGTATCCGGAAGAGCAAGAAGTGAAAGACATTCGTGTCAAGAACTGCACGATGGTTGGCACAACGAATGGCCTCAGAATCAAGACATGGCCTGATAAGTATCCAGGTGCTGCATCAGATATCACCTTCGGTGACATTGTCATGGACAAGGTTAAAAATCCTATCATCATTGACCAAGAGTATGAATGCGAACCGGCAAACTGCAAAAAGAAGCCTTCACTTGTAAATATAAAAGATGTTGTTTTTTCAAACATAAGGGGAACCACAATTTCACCAATTGCAGTGGATTTAAGGTGTAGCAAGCAGTTCCCATGCCAAGATATTAAACTTCAGAACATAGACCTGAACCTTGGACCCAAGCCTTCCGGTTCTAGATGTGCCAATATAAAACCAATCTATACGGGTGTTCAAAGGCCAGCAGCTTGCCTATAA 1269 0.4279 MASPKRIGVLILCFALVCYVDAKPKTKPFASPDIYKGKNVAKDEISPGEKIVNVMSFGAIPDGKFDCTQAFMHAWRAACKSNVQARLLIPKGRFVVSTMFFAGPCLTPGPITIQVVGTVAATTDISEYANGEWLMFEELDGIKLIGGGTFDGMGKGSWATAENCEADESNNCVRNPSSIYFHNVRNGIIQNIKSVDPKGFHLFVTSCANIRLRLLKLTAPATSPNTDGIHISNSIDVKLSKNIIETGDDCVSMIQGVNNVTINKLKCGPGHGISIGSLGKYPEEQEVKDIRVKNCTMVGTTNGLRIKTWPDKYPGAASDITFGDIVMDKVKNPIIIDQEYECEPANCKKKPSLVNIKDVVFSNIRGTTISPIAVDLRCSKQFPCQDIKLQNIDLNLGPKPSGSRCANIKPIYTGVQRPAACL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00377 422 Pfam Glycosyl hydrolases family 28 79 409 IPR000743 GO:0004650|GO:0005975
Gma09g00377 422 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Gma09g00377 422 PANTHER - 2 421 - -
Gma09g00377 422 SUPERFAMILY Pectin lyase-like 49 422 IPR011050 -
Gma09g00377 422 Gene3D - 39 420 IPR012334 -
Gma09g00377 422 PANTHER POLYGALACTURONASE 2 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00377 Gma-Chr9 3556144 3559679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00377 51 421 Glycoside Hydrolase AT4G18180 44.216 4.67e-107 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00377 K01213 - gmx:100782722 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00377 09 3556144 3559679 Gma09g00377 09 3556144 3559679 ECH