Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03081 atgtcttcgtcgtcatcgtcgtcgtcgtcgtcGGAAGATGAATCTATGTCGGAACAGAGCAATGAATTAGGACTTGATTTCATCTTGAGCTTGGACAATGTTCCATCAAAGCTCCCTCCACACCTCGAACTCTTTAAAACACGTGTTCTTTGCAACAACGATGCTCCTGTGCACACTGATACTGTTCAATATTCCGGTGCCTATGCTATTATGGGAGTTGATAATAGTGTGCGGTTGGATAGCTTCTGTGAAAACTTTAAGGTTGAAGTGAAGCGGCTGACGGATAGCGATATTGAATTTGATATGATTGGAATCGATCCGGCAATTGCCAATGCATTTCGAAGAATCCTTATAGCAGAGGTTCCAACAATGGCTATTGAAAGAGTATATATCGCAAACAATACATCGGTTGTACAAGATGAAGTTCTTTCCCATAGATTGGGTCTCATTCCAATTCGTGCTGATCCCAGGTTATTTGAATATCCAGAAAATGCAGGAGATGACAAAAATGAAAAGAACACCATTGTCTTCAAGCTACATGTTCGTTGTCAAGTGGGTCAACCTCGTATTACTGTGAAATCAGATAAACTGAAGTGGTTACCTAATGGGAGTGAGCTTCCCTGTGAAGATGTCAAACCAAATGCAGGTTCAAAACCAAAAACATTTACATCTTTTACTTGCAGCCAAGATTCACTTCCTGAATTTTCCAACAATTCAATTGGTCTTACATATTCGGATATTATACTGGCTAAACTTGGACCTGGTCAGgaaattgaacttgaagcgcatgcagttaaaggcactgggaagacacatgcaaaatggtccccagttgccaccacttggtatcggatgcttccggagGTTGTACTCTTGAAAGATGTTGAGGATGAGCTGGCTGAAGAATTAAAAAACAAGTGTCCAGTTAATGTGTTTGATATTGAAGACATTGGAAAAGGTAAAAGAAGGGCAAAAGTAGCCAGACCACGGGATTGCACTTTGTGTAGGGAATGCATCAGAGGGGGCAAAGAATGGGAAGATCGTGTATCATTACGCCGTGTTAAAAATCATTTCATTTTTACTATTGAATCAACTGGAGCATTACCCCCTGAAGTGCTGTTTACTGAAGCTGTGAAGATTTTGGAAGATAAATGTGAACGTGTGATTACTGAGCTTTCTTGA 1182 0.3545 MSSSSSSSSSSEDESMSEQSNELGLDFILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVDNSVRLDSFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHAVKGTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELKNKCPVNVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03081 393 Gene3D - 123 273 IPR036643 -
Gma08g03081 393 PANTHER BNAA01G22480D PROTEIN 26 393 - -
Gma08g03081 393 CDD RNAP_I_II_AC40 86 391 IPR033901 GO:0001054|GO:0001056
Gma08g03081 393 Gene3D - 88 384 IPR036603 GO:0006351|GO:0046983
Gma08g03081 393 PANTHER DNA-DIRECTED RNA POLYMERASE 26 393 - -
Gma08g03081 393 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 111 151 IPR001514 GO:0003677|GO:0003899|GO:0006351
Gma08g03081 393 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 87 392 IPR022842 GO:0003899|GO:0006351
Gma08g03081 393 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 99 385 IPR011263 GO:0003899|GO:0006351
Gma08g03081 393 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 122 277 IPR036643 -
Gma08g03081 393 SMART rpoldneu2 97 391 IPR011263 GO:0003899|GO:0006351
Gma08g03081 393 Pfam RNA polymerase Rpb3/RpoA insert domain 129 276 IPR011262 GO:0003899|GO:0006351|GO:0046983
Gma08g03081 393 SUPERFAMILY RBP11-like subunits of RNA polymerase 84 392 IPR036603 GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03081 Gma-Chr8 47514335 47518956 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03081 K03027 - gmx:100818494 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03081 08 47514335 47518956 Gma08g03081 08 47514335 47518956 ECH