Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03071 ATGCAGCTCCTCCGGCCACTGCTCGCGGCGGCGCTGCTCCTCCTCGCCACCCTCTCCGACGCGCACAACATCACCAGCATCCTCGCAAAGCACCCCGAGCTCTCCACCTTCAACCACTACCTCACCCTCACCCACCTCGCCCCCGAAATCAACGGCAAAACCACCATCACCGTCTGCGCCGTCGACAACGCCGCCATGTCGGACCTTCTCTCGAAGCACCCCTCCATCTACACCGTCAAGAACGTCCTCTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCACCAACGGCACCGCCCTCGCCGCCACAATGTACCAAGCCACCGGCACCGCCCCCGGATCCGCCGGCTTCGTCAACATCACCGACCTCCACGGCGGAAAAGTCGCATTCGCCCCTGAAAACAACGACGGCACACTCTCCTCAACGTTCGTCAAATCGGTGGAAGAAATCCCTTACAACATCTCCGTAATTCAGATCAGTAAGGTTCTCCCCTCTGCCGCAGCGGAAGCCCCTGCACCCGCACCCACCCAACAAAACCTCACCAACATTATGTCAAAACACGGTTGCAAAGTCTTCGCCGACACTCTCTCTGCTCAACCCGACGCTCTCAACACCTTCAATGACAACCTCGACGGTGGCTTAACCGTCTTTTGCCCCCTCGACGACGCGTTTAAAGCCTTTCTCCCCAAATTCAAAAACCTAACAAAATCTGGTAAGGCCGCGCTTCTTGAATTCCACGCTGTTCCGGTTTACCAGTCCAAAGCTACTCTCAAATCCAATAACGGACTTCAGAACACTCTCGCCACTGATGGCGCCAACAAGTTTGACTTCACCGTTCAAAACGACGGTGAAGATGTTACTCTGAAGACGAAGCTTACAACTGCCAAGATCACCGACACTTTGATTGATGAACAGCCGCTTGCGATTTTTGCTATTAATAAGGTGCTTCAGCCTAAGGAGTTATTTAAGGGTGAGGCGGAGGCTCCGGCGCCGGCGCCGGAGCCTTCTGCCGCCGACGCTCCTGCGCCGGCGAAGAAGGGGAAGAAGAAGAAGAAGGCGGCTGATGCGCCGGCGGATGATTCTGATGCTCCTGCTGATTCTCCCGATGACGCTGCCGATGTGACCGCCGATGATAGTAACGACGCCGTTAGACGTAACGGCGGGAGGTACGGTGGTGGTGTTGTTGCCTTGGTTTTGAGTTTGGTTTTTGGGTTACCGTTAATGCTTTGA 1248 0.5609 MQLLRPLLAAALLLLATLSDAHNITSILAKHPELSTFNHYLTLTHLAPEINGKTTITVCAVDNAAMSDLLSKHPSIYTVKNVLSLHVLLDYFGAKKLHQITNGTALAATMYQATGTAPGSAGFVNITDLHGGKVAFAPENNDGTLSSTFVKSVEEIPYNISVIQISKVLPSAAAEAPAPAPTQQNLTNIMSKHGCKVFADTLSAQPDALNTFNDNLDGGLTVFCPLDDAFKAFLPKFKNLTKSGKAALLEFHAVPVYQSKATLKSNNGLQNTLATDGANKFDFTVQNDGEDVTLKTKLTTAKITDTLIDEQPLAIFAINKVLQPKELFKGEAEAPAPAPEPSAADAPAPAKKGKKKKKAADAPADDSDAPADSPDDAADVTADDSNDAVRRNGGRYGGGVVALVLSLVFGLPLML 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03071 415 Gene3D FAS1 domain 20 170 IPR036378 -
Gma08g03071 415 ProSiteProfiles FAS1/BIgH3 domain profile. 21 169 IPR000782 -
Gma08g03071 415 ProSiteProfiles FAS1/BIgH3 domain profile. 182 322 IPR000782 -
Gma08g03071 415 SUPERFAMILY FAS1 domain 178 325 IPR036378 -
Gma08g03071 415 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 7 398 - -
Gma08g03071 415 SUPERFAMILY FAS1 domain 27 169 IPR036378 -
Gma08g03071 415 Gene3D FAS1 domain 192 324 IPR036378 -
Gma08g03071 415 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7 398 IPR033254 -
Gma08g03071 415 Pfam Fasciclin domain 33 109 IPR000782 -
Gma08g03071 415 Pfam Fasciclin domain 195 324 IPR000782 -
Gma08g03071 415 MobiDBLite consensus disorder prediction 331 392 - -
Gma08g03071 415 SMART fasc_3 221 325 IPR000782 -
Gma08g03071 415 SMART fasc_3 57 172 IPR000782 -
Gma08g03071 415 MobiDBLite consensus disorder prediction 368 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03071 Gma-Chr8 47333418 47334744 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03071 - - gmx:100814766 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03071 08 47333418 47334744 Gma08g03071 08 47333418 47334744 ECH
Gma18g00707 18 7332995 7334242 Gma08g03071 08 47333418 47334744 GST