Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03067 ATGATGCAAGGGTTTGTCTCTCTCTGTCTCTCTGACTCTTCTCTTCTGCACACAACCACATGCCCTGGGGGGAAATCCCCAATAATGGACGAAGGTGAGGGAGGCGATCCCATGGATCAGTTCCACCGTAACGAGGCTATATCCGCTGTAGCTGACGACGGTTTCTTGGGCGAGGAGGACGACGATTACGAGGATCTTTACAACGATGTTAATGTCGGCGAAGGGTTTCTTCAATCGTTGCGGAAGAACGAGGATTCGGGGTTTCGGAACGACGTCGTCGAGGACAAGAAGCCGCTGCAGCAGCCTGATCAGGATCCCGTTGTCGGGGTTTCGATACCGGGTGTCGGTGGTGGCGGTGGAAGTGGAGTTGTGGAAGGCAGGGTTTCTGGGAATGTTGATGGGTTACAGAATCAAGGGTTTAGAGGGGGTAATTCTGGTGGAGGAGGTGGATCAGGTGGGCTTAAGGTTGAATTAGGGCAGCCATCTGGGAAATTGAGTGAAATTGAGGAGCAGGGTGGGAATGATGGTACTGATGTGCAGGGGATTGGGCAGCAACCACATGGTGGAGTTGTTGGGAGTGTCGGGAATGAGGGTTTGGTGAGACAAGGTCAAGGTGGTGGAGGAGGAGCAGGGAATGTTAATAGGGTTGGTGGAAATGGTGTTGGGAATAGTGTGAGTACTGTTAATAGTGTTAATACTGGAGGAGGTGGAGGTGTTGTTGTTGTTGGTGGTGGTGCTCCTCCTGGTGGTGGTGGGGGTACCATACTATTTGTGGGTGACTTGCATTGGTGGACTACTGATGCTGAGCTGGAAGCTGAGCTTTCCAAGTATGGGTCTGTGAAGGAGGTGAAGTTTTTCGATGAGAAGGCCAGTGGGAAATCAAAGGGGTATTGCCAGGTTGAGTTTTATGAAGCTTTTGCTGCGACTGCTTGTAAGGAAGGGATGAATGGGCATGTTTTTAATGGGAGACCTTGTGTTGTTGCATTTGCATCGCCTTTTACGGTTAAGAAAATGGGGGAGGCTCAGATAAACAGGAATCAGCAGATGAACCAAACTGCTGTTCCTCAGGGAAGGAGGGGACCTGCTGATGCAGGGGCTAAGCCTGGTGGGAGTAATATTTCGACAGGTGGTAATTACCAAGGTGGAGATGGAAATAGAAGTTATGGAAGAGGAGGAGGAGGTAATTGGGGGAGAGGAAATAATCCTGGTATGGGGAATAGAGGGCCTATTAATCCAATGAGGAACAGGGGTGGTGGCATGGGTGGGAGAGGTATAATGGGTAATGGTGGAAATGGGTTTGGACAGGGTATGGGTGCTACTCCACCACTGTTGCATCCTCAGTCCATGATGAATCAGGGTTTTGATCCTGCATTTGGCCCCATGGGTAGAATGGGTAGTTACGGAGGCTTTCCCGGTGCTCCGACACCACCATTCTCTGGGATTTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCAGCCTTTTTTGGAAGAGGGATGCCTGTTAATGGTATGGGGATGATGCCCGGATCAGGCATGGATGGTCCTAATATGGGAATGTGGTCAGATCCAAATATGGGTGGATGGGGTGGTGAAGAGCCTGGTGGTGGGAAGGCTGGAGAGTCCAGTTATGGGGAGGAAGCTGCATCTGACCATCAGTATGGTGAGGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAGAAAGATAGAGGCTCAGAAAGAGACTGGTCTGGTACTTCTGAGAGAAGGTACAGAGATGATAGAGATCAAGGATATGACAGAGATGCACCTAAAGAAAAAGACATGGGCCATGACCATGAATGGTCTGAAAGAAGGCATCGTGATGATAGAGAAACGGGCCGAgaacgatctcgtgatcgtgaccgtgaacgatctcgagaccgtgatcgtgaCCGCGAAAGGGATTACCGTGAGCGTGACAGGCACAAAGAAGATAGGGACAGGTATGCAGATCATCACAGGTACAGAGACCGGGAAGCAGAACACGATGATGAGTGGGAGAGGGGACGATCATCAAAGCCTCACAGAGCATGGTTTCTTTCTTCTTTGAGAAAGGACAATTGTTTTGAGAAAGGAAACTGTTCATTCAAACTCTGGGTTGTGATGGGGATCAAGCCTCTACAATGTTGGAGATTCAAGCCATGA 2196 0.4891 MMQGFVSLCLSDSSLLHTTTCPGGKSPIMDEGEGGDPMDQFHRNEAISAVADDGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNDVVEDKKPLQQPDQDPVVGVSIPGVGGGGGSGVVEGRVSGNVDGLQNQGFRGGNSGGGGGSGGLKVELGQPSGKLSEIEEQGGNDGTDVQGIGQQPHGGVVGSVGNEGLVRQGQGGGGGAGNVNRVGGNGVGNSVSTVNSVNTGGGGGVVVVGGGAPPGGGGGTILFVGDLHWWTTDAELEAELSKYGSVKEVKFFDEKASGKSKGYCQVEFYEAFAATACKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNQTAVPQGRRGPADAGAKPGGSNISTGGNYQGGDGNRSYGRGGGGNWGRGNNPGMGNRGPINPMRNRGGGMGGRGIMGNGGNGFGQGMGATPPLLHPQSMMNQGFDPAFGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPGSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGTSERRYRDDRDQGYDRDAPKEKDMGHDHEWSERRHRDDRETGRERSRDRDRERSRDRDRDRERDYRERDRHKEDRDRYADHHRYRDREAEHDDEWERGRSSKPHRAWFLSSLRKDNCFEKGNCSFKLWVVMGIKPLQCWRFKP 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03067 731 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 325 IPR000504 GO:0003723
Gma08g03067 731 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 29 697 - -
Gma08g03067 731 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 332 IPR000504 GO:0003723
Gma08g03067 731 SMART rrm1_1 255 328 IPR000504 GO:0003723
Gma08g03067 731 MobiDBLite consensus disorder prediction 348 425 - -
Gma08g03067 731 CDD RRM_CFIm68_CFIm59 256 329 - -
Gma08g03067 731 Gene3D - 245 339 IPR012677 -
Gma08g03067 731 SUPERFAMILY RNA-binding domain, RBD 252 340 IPR035979 GO:0003676
Gma08g03067 731 MobiDBLite consensus disorder prediction 137 218 - -
Gma08g03067 731 MobiDBLite consensus disorder prediction 524 687 - -
Gma08g03067 731 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 29 697 IPR034772 -
Gma08g03067 731 MobiDBLite consensus disorder prediction 561 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03067 Gma-Chr8 47308564 47314710 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03067 K14398 - gmx:100813702 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00711 18 7398748 7401647 Gma08g03067 08 47308564 47314710 GST