Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03013 ATGAGTTTCGTGCCAAAGGAGACAATCGAAGTCATCGCACAGAGCATCGGCATCACCAACTTGTCCCCCGATGTTGCCCTCGCTCTCGCTCCCGATCTCGAATATCGCATTCGCGAAATCATGCAGGAATCGGTAAAATGCATGCGCCATTCAATGAGAACTTTTCTTACTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAGCCAATATATGGGTCCACCTCTAATGATCCTCCGCAGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGATGACAAAGACGTGGATATCAAAGATATCATTGAAGCTCCTTTACCAAAAGCACCCCTTGATACATCAATTACTAGCCACTGGTTGGCTATTGAAGGTGTGCAACCTGCAATTCCTGAAAATGCTCCAGTTGAAGCTCCCTCCGAGATAAGAAAATCTGAATATAAGGAAGATGGGCTTCCTGTTGATGTTAAATTACCTGTTAAACATTTAATAACAAGGGAGCTTCAGCTTTACTATGAGAAAATAACTGACCTAACTTTAAATAAGCCTGGATCCATTCCTTTTAGAAGAGCATTGGTTAGCTTGGCAACAGACTCGGGACTCCATCCCTTAGTTCCTTATTTCACATTTTTTGTTGCTGATGAGGTGGCACAGAATTTAAATAATTTAGCTGTTTTATTTGCCTTGATGCGCCTTGTGCGGAGCCTTTTGCAAAATTCTCAGATACACATAGAACTTTATTTACATCAATTGATGCCACCTATCATTACTTGCATTGTTGCAAAAAGGATAGGAAACAGACTATCTGATGATCACTGGGAGCTTCGGAACTTCAGTGCTAATCTTGTTGCTTCAATATGCCAAAGATTTGGGCATATTTATCACAATCTGCAGCCACGTGTGACAAAGACATTTCTTCATTCTTTCTTGGACCCTACAAAAGCTTTGCCTCAACACTATGGTGCAATTAAAGGGATAGAAGCTCTCGGATCAAGACTGATTCGCTTGCTTATACTTCCAAATCTCGAGCCATATTTGCATCTTCTTGAGCCAGAAATGCAACCTGAGAAGCAAAAAAATGAAATGAAGAGGCATGAAGCTTGGCAAGTTTATGGGGCTTTGTTGGGTGCAGCAGGACAATGCGTGCATGAAAAGGTCAAAATGTTTAGCAATTTGTTCTCTCCTCCAACTCGGGTTACTTCAAGAGGCAGTGGAAAAGCTGTGATTGCGATGTCAGGCAAACGAAAAGCCAGCACTGACAATCTGATGCAGCAGCAGCAGCAGCTGCCTCCAATGAAGAAACTTGCAACGGATGGCCCTGGGGGTGTGGTAGCAATGAACTCCATGTTAGTTGACATGCAAGGTTCAACAGGTGGATATTCCTCCATGATGGGGGTTTCTTCAATGTCAATGGCTCGTCAAATATCCATCGACAACGTGCCGGGGAGGGAGGTTGGAGATCAACAAAGGAAGTTGTCGTCCACTCTTGCTCAGGCTTGGAAGGATGACATTGATACAGGAAATTTGGTGTCATCAGTGGTTGAATTATTTGGCGAAAGTGTGTTGCCGTTTGTTGTTTCAAACCCTGAAGCATGTATGTTTTTGTAG 1620 0.4302 MSFVPKETIEVIAQSIGITNLSPDVALALAPDLEYRIREIMQESVKCMRHSMRTFLTTEDVDTALALRNLEPIYGSTSNDPPQFKRAAGHKDLFYIDDKDVDIKDIIEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPVEAPSEIRKSEYKEDGLPVDVKLPVKHLITRELQLYYEKITDLTLNKPGSIPFRRALVSLATDSGLHPLVPYFTFFVADEVAQNLNNLAVLFALMRLVRSLLQNSQIHIELYLHQLMPPIITCIVAKRIGNRLSDDHWELRNFSANLVASICQRFGHIYHNLQPRVTKTFLHSFLDPTKALPQHYGAIKGIEALGSRLIRLLILPNLEPYLHLLEPEMQPEKQKNEMKRHEAWQVYGALLGAAGQCVHEKVKMFSNLFSPPTRVTSRGSGKAVIAMSGKRKASTDNLMQQQQQLPPMKKLATDGPGGVVAMNSMLVDMQGSTGGYSSMMGVSSMSMARQISIDNVPGREVGDQQRKLSSTLAQAWKDDIDTGNLVSSVVELFGESVLPFVVSNPEACMFL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03013 539 SUPERFAMILY Histone-fold 1 65 IPR009072 GO:0046982
Gma08g03013 539 SMART TAF_cls 2 68 IPR004823 -
Gma08g03013 539 Pfam TAF6 C-terminal HEAT repeat domain 259 346 IPR011442 GO:0006367
Gma08g03013 539 CDD TAF6C 165 381 IPR011442 GO:0006367
Gma08g03013 539 SUPERFAMILY ARM repeat 220 386 IPR016024 -
Gma08g03013 539 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Gma08g03013 539 Gene3D - 164 369 IPR046344 GO:0006367
Gma08g03013 539 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Gma08g03013 539 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 539 - -
Gma08g03013 539 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 539 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03013 Gma-Chr8 46703129 46708918 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03013 K03131 - gmx:100799998 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03013 08 46703129 46708918 Gma08g03013 08 46703129 46708918 ECH
Gma18g00772 18 8574839 8580905 Gma08g03013 08 46703129 46708918 GST