Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03007 ATGTTTGCTTACAGGGTTTTGTCCCGTTCCTCTGCCACCCTTTCTCGAAGCTTCACCCTTTTCTCTGTTTCACGAAATTCCCAACCTTTCTCCACCAACCTCTCCAATAACTTCAATTCCCTCCTTCACCCATCTCCCAACAAGCTGATTCCAGTTCAAACCAATTTTCTGAATTCAATGAATCCATCATTGACTTCGAGATTTGGATTTTCTTCAACGGCCTCACATGAACATGCAAGTGAAGGAGCAAAGGTATCTGATCAGTCTGAACAAGCCGAAGCTGCGGATCAAACCAAAGAATCAGATGTAGAGATTGAATGTGATCTGTCCAGGGATGATTTGATAAAGCTTGTTGCTGAGAAGGAACAACTTTTGAAGTTGAAGCACAAGGAGATTGAGAAAATGCAGGATAAAGTTCTGCGAACTTATGCAGAGATGGAGAATGTCATGGATAGGACACGACGCGAAGCGGAGAATTCGAAAAAATTTGCTATACAGAATTTTGCAAAGAGTTTACTAGACGTCGCTGATAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGAAAGCTTTTCGAAAATTGAATCTCCTGAGGAGTCTTCTGAAGCAGCAGAACTCCTGAAAACACTTCTAAAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGGTACTCAAAAAGTTTGGTGTGAAAAAATTTGATCCTACAAATGAGCCTTTTGATCCACACATGCACAATGCCATCTTCCAAATCCCTGATGCTTCCAAGGCTCCTGGCACTGTTGGAGTTGTTCTGAAGGCAGGATATATGCTCTATGATCGTGTTCTTCGTCCGGCAGAAGTTGGTGTAACTCAAGAAGTGGAGGATAACTAA 870 0.4207 MFAYRVLSRSSATLSRSFTLFSVSRNSQPFSTNLSNNFNSLLHPSPNKLIPVQTNFLNSMNPSLTSRFGFSSTASHEHASEGAKVSDQSEQAEAADQTKESDVEIECDLSRDDLIKLVAEKEQLLKLKHKEIEKMQDKVLRTYAEMENVMDRTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIESPEESSEAAELLKTLLKGVEMTEKQLAEVLKKFGVKKFDPTNEPFDPHMHNAIFQIPDASKAPGTVGVVLKAGYMLYDRVLRPAEVGVTQEVEDN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03007 289 Hamap Protein GrpE [grpE]. 87 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Gma08g03007 289 Gene3D Head domain of nucleotide exchange factor GrpE 228 283 IPR009012 GO:0006457
Gma08g03007 289 ProSitePatterns grpE protein signature. 239 282 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Gma08g03007 289 Coils Coil 118 138 - -
Gma08g03007 289 MobiDBLite consensus disorder prediction 68 92 - -
Gma08g03007 289 PRINTS GrpE protein signature 140 156 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Gma08g03007 289 PRINTS GrpE protein signature 236 251 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Gma08g03007 289 PRINTS GrpE protein signature 263 282 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Gma08g03007 289 PANTHER GRPE PROTEIN 7 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Gma08g03007 289 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 229 284 IPR009012 GO:0006457
Gma08g03007 289 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 120 228 IPR013805 -
Gma08g03007 289 PANTHER GRPE PROTEIN HOMOLOG 7 286 - -
Gma08g03007 289 CDD GrpE 133 282 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Gma08g03007 289 Pfam GrpE 118 283 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Gma08g03007 289 MobiDBLite consensus disorder prediction 68 103 - -
Gma08g03007 289 Gene3D - 83 227 IPR013805 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03007 Gma-Chr8 46642158 46644848 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03007 K03687 - gmx:100798944 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03007 08 46642158 46644848 Gma08g03007 08 46642158 46644848 ECH