Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03005 ATGCTTCCTCAGCGCATGAAGAAGGCCATCACTGATAACCCTAAGAAGCTTGCCAACTTGATTGACCTCGTCAACCTTCCATCCACGCTCAGAGAATTCGTGGGTCAGTCTCAGATTTCCCGCTTGGGCTGTTTCAAGTGCATTTGGTCCTACATCAAAACAAATAATCTTCAGGATCAGAATAACAAGAATGTGGTAAACTGTGATGAAAAGTTAAAAAGTATTTTGTTGGGGAAACCTCAGGTTGAGTTAGCAGAACTTCCTGCACTTATCAAGATGCATTTTCCAAAAGAGCCCAAATGA 303 0.4224 MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQNNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03005 100 Pfam SWIB/MDM2 domain 24 95 IPR003121 -
Gma08g03005 100 PANTHER OS09G0133000 PROTEIN 2 99 - -
Gma08g03005 100 SUPERFAMILY SWIB/MDM2 domain 16 97 IPR036885 -
Gma08g03005 100 Gene3D SWIB/MDM2 domain 16 100 IPR036885 -
Gma08g03005 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Gma08g03005 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 2 99 - -
Gma08g03005 100 SMART swib_2 20 100 IPR019835 -
Gma08g03005 100 CDD SWIB-MDM2_like 24 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03005 Gma-Chr8 46632558 46635707 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma08g03005 SWIB 4.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03005 - - gmx:100527179 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03005 08 46632558 46635707 Gma08g03005 08 46632558 46635707 ECH
Gma18g00779 18 8687797 8689496 Gma08g03005 08 46632558 46635707 GST