Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02775 ATGGCCACAAGCCCACCTTCTCTGCTTTTATCCACAACCACCAGCACCAACAACCAAAGCCAACACCTTATCCACTTGCTGAACGAACCCACCACTATCACTATGCCTCAGCTCAAGCAAATTCACGCTCAAACGCTTCGCACAGTTAACAGCAACCACCCAAATGCTATCTTTCTCTACACCAATATTCTTCAACACTACTCCTCTCTGACTCAGCCCAATCTCACCTACGCCACTCGCGTGTTTCACCACTTTCCCAACCCAAATTCCTTCATGTGGAACACTCTCATAAGAGTCTACGCAAGAAGCACCAACACCAACCACAAACACAAGGCCATGGAGCTCTACAAAACAATGATGACAATGGAAGAAAAAACCGCAGTTCCCGATAACCACACGTTCCCTATTGTTCTAAAGGCTTGTGCTTACACTTTTTCTCTCTGTGAAGGAAAACAGGTGCATGCCCACGTTTTGAAACATGGGTTTGAGTCGGATACATACATCTGTAACAGTTTGGTTCATTTTTATGCGACGTGTGGGTGCCTAGACTTGGCAGAGAAAATGTTTTATAAGATGAGTGAGAGAAATGAGGTTTCGTGGAATATCATGATTGATTCTTATGCTAAAGGTGGAATCTTTGACACTGCCTTGAGAATGTTTGGTGAGATGCAGAGGGTGCATGACCCTGATGGGTATACAATGCAGAGTGTTATTAGTGCTTGTGCTGGTTTGGGTGCTTTGTCTTTGGGTTTGTGGGTTCATGCTTATATTTTGAAAAAGTGTGACAAGAATATGGTTGATGATGTTTTGGTCAATACTTGTTTGGTGGATATGTATTGCAAAAGTGGGGAGTTGGAAATTGCAAAGCAAGTCTTCGAAAGCATGGCTTTTAGAGATCTGAATGCATGGAATTCAATGATATTGGGTTTAGCAATGCATGGTGAGGCTAAAGCTGCATTGAACTATTATGTCAGAATGGTGAAGGTAGAAAAAATTGTGCCTAATTCAATCACTTTTGTTGGTGTCTTGAGTGCATGTAACCATAGGGGAATGGTTGATGAGGGGATTGTGCATTTTGACATGATGACTAAGGAGTACAATGTGGAACCAAGATTGGAGCATTATGGTTGTCTTGTTGATCTTTTCGCTCGAGCCGGACGCATCAATGAGGCTCTAAACTTGGTCTCAGAAATGTCAATCAAACCAGATGCTGTAATCTGGAGGAGTCTTTTGGATGCATGTTGCAAGCAATATGCAAGTGTTGAGCTAAGTGAAGAAATGGCAAAGCAAGTCTTTGAGTCAGAGGGGAGTGTGTGTAGCAGTGGAGTTTATGTGCTTTTGTCAAAAGTGTATGCTTCTGCTTGTAGGTGGAATGATGTAGGATTGCTTAGAAAACTAATGAGTGAAAAGGGTGTGACTAAAGAGCCTGGCTGCAGTATAATAGAGATAGATGGAGTGGTTCATGAATTTTTTGCTGGTGACACCACTCATCCAAAGAGTGAAAATATATATAAGGTTGTGAATGAAATTGAGGAGAAGCTAGAATCAATAGGGTATTTACCTGACTATTCAGGGGCACCTATGGTTGATGAGGTTAATGATGGAAAACTGAATACTCTGAGGTTGCATAGTGAGAGACTGGCTATAGCTTTTGGGATCTTAAACTCAAAACCTGACGTGCCAATTAGAGTGTTTAAGAACCTTAGGGTGTGTAATGATTGCCACAGGGTAACTAAATTGATCTCCAGGATTTACAATGTGGAGATAATTGTAAGAGATCGTGCTCGATTCCATCATTTTAAAGATGGAACATGTTCTTGTATGGATTATTGGTGA 1836 0.4161 MATSPPSLLLSTTTSTNNQSQHLIHLLNEPTTITMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVHDPDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVCSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIYKVVNEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKPDVPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02775 611 PANTHER OS01G0913400 PROTEIN-RELATED 27 553 - -
Gma08g02775 611 Pfam DYW family of nucleic acid deaminases 530 611 IPR032867 GO:0008270
Gma08g02775 611 Pfam PPR repeat family 196 242 IPR002885 -
Gma08g02775 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Gma08g02775 611 PANTHER BNAC04G18690D PROTEIN 27 553 - -
Gma08g02775 611 Gene3D Tetratricopeptide repeat domain 328 531 IPR011990 GO:0005515
Gma08g02775 611 Gene3D Tetratricopeptide repeat domain 261 327 IPR011990 GO:0005515
Gma08g02775 611 TIGRFAM PPR: pentatricopeptide repeat domain 198 225 IPR002885 -
Gma08g02775 611 TIGRFAM PPR: pentatricopeptide repeat domain 302 335 IPR002885 -
Gma08g02775 611 TIGRFAM PPR: pentatricopeptide repeat domain 273 296 IPR002885 -
Gma08g02775 611 TIGRFAM PPR: pentatricopeptide repeat domain 167 196 IPR002885 -
Gma08g02775 611 Pfam PPR repeat 302 328 IPR002885 -
Gma08g02775 611 Pfam PPR repeat 374 398 IPR002885 -
Gma08g02775 611 Pfam PPR repeat 273 295 IPR002885 -
Gma08g02775 611 Pfam E motif 418 482 IPR046848 -
Gma08g02775 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 226 IPR002885 -
Gma08g02775 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Gma08g02775 611 Gene3D Tetratricopeptide repeat domain 38 150 IPR011990 GO:0005515
Gma08g02775 611 Gene3D Tetratricopeptide repeat domain 151 249 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02775 Gma-Chr8 43567674 43569509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02775 80 611 Glycoside Hydrolase AT3G49170 34.323 4.34e-112 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02775 - - gmx:100791183 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02775 08 43567674 43569509 Gma08g02775 08 43567674 43569509 ECH