Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02751 ATGAATATCAAACCCATCATCATCCTAGCTTTCTTAATTTCCCTCTCTTTAACAAACGTCGTCGTTTCAGCTCGACTCTTTCCCAACGTCTCCTCCTGGCTCAACGCCCACGCCCCTACTGGAGGCGCGTGGGATGCCTTTCTCAACTTTACCGGTTGTCACCGCGGCGACAAGTACGACGGCCTCGCCAATTTAAAATCATACTTTGAACGATTCGGTTACTTCCCTCACGCGCCGCCCTCCTCGAATTTCTCCGATGAATTCGACGACGCGCTCGAATCCGCCATCAAAACTTACCAGAAGAACTTCAACCTGAACGTCACTGGCGTCCTCGACGACGCCACCGTGCAGCAGATCGTGCTGCCTCGGTGCGGCGTCGCCGATATAATCAACGGCACAACCACGATGAACGCCGCCAAGGAGAACGAGACGGCGTCGTTTAGCAAGCCGAAGTTTCACACGGTGGCGCACTTCACTCTTTTTCCTGGCATGCCGCGGTGGCCGGAGGGAACGCAGGAGCTGACGTACGCGTTCTTCCCCGGGAACGGGCTGAGCGACGCCGTGAAAGGCGTGTTCGCCGCCGCGTTCGCGCGCTGGGCTGAGGTGACGTCGCTGAAGTTCCGCGAAACGGCGTCGTACTTCGGCGCCGACATCAGGATCGGGTTCTTCAGCGGCGACCACGGCGACGGGGAGCCGTTCGACGGGAGCTTGGGGACGTTGGCGCACGCGTTCTCGCCGACGAACGGGAGGTTCCACCTGGACGCCGCCGAGGACTGGGTGGTTTCCGGCGATGTGACGCGGTCAGCGCTGCCGACAGCGGTGGATTTAGAATCCGTGGCGGTGCACGAGATTGGGCACTTGCTAGGGTTAGGTCACTCATCGGTAGAAGAAGCGGTTATGTTTCCGACGATTTCTTCTCGGAAGAAGAAGGTGGTGTTGGCAAGGGACGACATCGAAGGGATTCAATTCCTCTATGGTTCCAACCCTAATTTCAATGGCTCCACCGCCACGTCAGCACCGGAGAGGGACGCTAGCGACGGTGGTCGGTGCCTCACTTGTGTGGGGCCCTCGTCCGGCGTTTTCGCTTTGTTGACATTTGCGTTCTTATTTTAG 1113 0.5813 MNIKPIIILAFLISLSLTNVVVSARLFPNVSSWLNAHAPTGGAWDAFLNFTGCHRGDKYDGLANLKSYFERFGYFPHAPPSSNFSDEFDDALESAIKTYQKNFNLNVTGVLDDATVQQIVLPRCGVADIINGTTTMNAAKENETASFSKPKFHTVAHFTLFPGMPRWPEGTQELTYAFFPGNGLSDAVKGVFAAAFARWAEVTSLKFRETASYFGADIRIGFFSGDHGDGEPFDGSLGTLAHAFSPTNGRFHLDAAEDWVVSGDVTRSALPTAVDLESVAVHEIGHLLGLGHSSVEEAVMFPTISSRKKKVVLARDDIEGIQFLYGSNPNFNGSTATSAPERDASDGGRCLTCVGPSSGVFALLTFAFLF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02751 370 Gene3D Collagenase (Catalytic Domain) 50 332 IPR024079 GO:0008237
Gma08g02751 370 CDD ZnMc_MMP 166 326 IPR033739 GO:0008237|GO:0008270
Gma08g02751 370 PRINTS Matrixin signature 119 132 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma08g02751 370 PRINTS Matrixin signature 192 207 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma08g02751 370 PRINTS Matrixin signature 216 244 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma08g02751 370 PRINTS Matrixin signature 279 304 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma08g02751 370 PRINTS Matrixin signature 313 326 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma08g02751 370 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 161 330 - -
Gma08g02751 370 PANTHER MATRIX METALLOPROTEINASE 6 367 - -
Gma08g02751 370 SUPERFAMILY PGBD-like 53 129 IPR036365 -
Gma08g02751 370 Pfam Matrixin 171 326 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Gma08g02751 370 SMART col_5 163 327 IPR006026 GO:0006508|GO:0008237|GO:0008270
Gma08g02751 370 PANTHER MATRIX METALLOPROTEINASE 6 367 - -
Gma08g02751 370 Pfam Putative peptidoglycan binding domain 63 118 IPR002477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02751 Gma-Chr8 43182783 43183895 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02751 - - gmx:100782143 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02751 08 43182783 43183895 Gma08g02751 08 43182783 43183895 ECH