Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02681 ATGAGTGGCTTGAGTTTCAAGGGCTTCACATACATGTTCCTCATTGCATTTCTCATTTGGTCCTTCAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCACTGGAGGCAAAGCAGGGATGTCTCTGCTTCTTTGTACAAGAAGAAAGGCAAAAACTATAGCAATGCTCACAACAAGAACCATGGTGGAGGATCAAAATCAAAGCCTCCATCATCACACAAAGGCACACCAACATTACCAAAGCCTCCACCACAACATAAGAACACTCCCTCACCACCATATCCAACTCCACCAAGTGATGATACCCCCACAACTCCACCACCAAAAGGTTACAATGGTGGTGGCCATTCTCCCACCACCACCTTCAATGTGCTTGATTTTGGAGCCAAGGGAGATGGAAAATCTGATGACACAAAGGCATTTCAAGAGGCTTGGGCTGAAGCTTGTAAAGTAGAATCATCAACCATGCTCGTCCCAGCAGACTACGTATTCTTTGTGGGGCCCATTTCATTCTCTGGCCCATACTGTAAACCCAGCATCGTTTTCCAGCTTGATGGCACCATTGTTGCACCAACAAGCCCCAATGCTTGGGGCAAAGGACTACTACAGTGGTTGGAATTTTCCAAGTTAGTGGGAATTACCATCCAAGGAAATGGCATCATTGATGGAAGAGGCTCAGTGTGGTGGCAAGACAATCCATATGATGATCCTATTGATGATGAAGAAAAGCTCATTGTCCCTTTGAACCACACAATAGGGAGCCCGAGCCCTCCACTGCCGATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACTGCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATAACAATTCAAAATAGTCCACAATGCCATCTCAAGTTTGACAGCTGTAATGGGGTCATGGTCCATAATGTGACCATATCATCTCCTGGGGACAGTCCTAACACAGATGGAATTCACCTTCAGAACTCCAAAGATGTGTTAATATACGGCAGCACCATGGCCTGCGGAGATGACTGTATTTCGATACAAACTGGATGCTCGAACGTATACGTACACAATGTCAACTGTGGACCAGGGCATGGAATCAGCATTGGAAGTCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGATCAGGTTCTGTACAAGGAGTGCTATTCTCAAATATACAAGTTTCTGAAGTTGAACTCCCAATTGTGATCGATCAATTCTACTGTGACAAAAGAACCTGCAAAAACCAAACGTCAGCTGTGTCTCTCGCCGGAATCAACTATGAAAGGATAAGGGGGACATACACCGTTAAGCCAGTTCATTTTGCCTGCAGTGATAGCCTACCTTGTGTGGATGTTTCTCTAACCTCTGTTGAGTTAAAACCAATTCAAGAAAAATACCATCTTTACAATCCTTTCTGCTGGCAGACTTATGGTGAATTGAAAACTCCAACAGTCCCACCAATTGATTGTCTACAAATCGGGAAGCCAACAAACAATCGGATTCAGACAGATCATGATTTATGTTGA 1617 0.4447 MSGLSFKGFTYMFLIAFLIWSFNFEACIARRGKHWRQSRDVSASLYKKKGKNYSNAHNKNHGGGSKSKPPSSHKGTPTLPKPPPQHKNTPSPPYPTPPSDDTPTTPPPKGYNGGGHSPTTTFNVLDFGAKGDGKSDDTKAFQEAWAEACKVESSTMLVPADYVFFVGPISFSGPYCKPSIVFQLDGTIVAPTSPNAWGKGLLQWLEFSKLVGITIQGNGIIDGRGSVWWQDNPYDDPIDDEEKLIVPLNHTIGSPSPPLPIQSEMGGKMPSVKPTALRFYGSFNPTVTGITIQNSPQCHLKFDSCNGVMVHNVTISSPGDSPNTDGIHLQNSKDVLIYGSTMACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQFYCDKRTCKNQTSAVSLAGINYERIRGTYTVKPVHFACSDSLPCVDVSLTSVELKPIQEKYHLYNPFCWQTYGELKTPTVPPIDCLQIGKPTNNRIQTDHDLC 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02681 538 Gene3D - 115 531 IPR012334 -
Gma08g02681 538 ProSitePatterns Polygalacturonase active site. 362 375 IPR000743 GO:0004650|GO:0005975
Gma08g02681 538 SMART pbh1 210 231 IPR006626 -
Gma08g02681 538 SMART pbh1 355 375 IPR006626 -
Gma08g02681 538 SMART pbh1 414 435 IPR006626 -
Gma08g02681 538 SMART pbh1 332 353 IPR006626 -
Gma08g02681 538 SMART pbh1 305 331 IPR006626 -
Gma08g02681 538 SMART pbh1 385 406 IPR006626 -
Gma08g02681 538 MobiDBLite consensus disorder prediction 48 74 - -
Gma08g02681 538 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 528 - -
Gma08g02681 538 SUPERFAMILY Pectin lyase-like 118 537 IPR011050 -
Gma08g02681 538 MobiDBLite consensus disorder prediction 75 105 - -
Gma08g02681 538 PANTHER - 6 528 - -
Gma08g02681 538 MobiDBLite consensus disorder prediction 46 128 - -
Gma08g02681 538 Pfam Glycosyl hydrolases family 28 152 232 IPR000743 GO:0004650|GO:0005975
Gma08g02681 538 Pfam Glycosyl hydrolases family 28 272 490 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02681 Gma-Chr8 42002814 42008237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02681 4 538 Glycoside Hydrolase AT1G60590 63.148 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02681 - - gmx:732602 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02681 08 42002814 42008237 Gma08g02681 08 42002814 42008237 ECH