Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02680 ATGCAAAAGCCTCTACTCCACTCCTTCATCAGAGCCATAACAACTCTTACACCAATACCTCCACACACTTTTCTTCACCTTCACAACCCCAGCGACAGTGTCATCTACCTCAAGAACCGCGAAATCGACGCTTTCATAAAACTTAGAAACCTGAACGCTGCACTCGCAGTGTTCCACACCACGCCACTGCGCGACACTGTCACCTACAACTTAATTATTTCCGCGTTCCGAAACCAACCAAATCACGCTCTTCGTTTCTACGCTGAAATGGGTTTGCGTGGAATAAGAGAAAGCCCAACCACGTTAACCTCTGTTATAGCGGTTTGCACCAACGCTATGTTTTTCAAAGAGGGTGTTCAGGTGCATTGCAGGGTGATCAAGTTCGGGTTTACATGCAACGTGTTCGTGGGTGGTGCACTTGTTGGGTTTTACGCGCACGTGGGGGAATGTGGGGTGGCACTGGACTTGTTTGATGAGTTGCCAGAGAGAAACTTGGCTGTCTGGAACGTCATGCTGCGTGGGTTGTGTGAACTGGGTCGTGTAAATGTTGAAGACTTGATGGGGTTTTATTACCCTCGGATGCTTTTTGAAGGTGTGCAGCCAAATGGGGTTACGTTTTGTTATTTGCTTAGAGGCTGTGGTAATCAGAGACGGTTGGAGGAAGGGAAGAAGATTCAAGGGTGCGTTTTGAAGATGGGTTTGGTGGAATCGAGTGTTTTTGTTGCCAATGCTCTGGTGGATTTTTACTCTGCGTGTGGGTGTTTTGTTGGTGCAAGGAGGTGTTTTGAGGACATAGAAAACGAGGATGTTATTTCGTGGAACTCGTTGGTTTCGGTTTATGCGGAGAATAATATGTTAATTGAGGCTTTGGAGGTGTTTTGTGTCATGCAAGTGTGGAGGAAAAGGCCATCAATTCGTTCTTTGGTGGGTTTGTTGAATTTGTGCAGTAGAAGTGGAGAGCTTTGTTTGGGGAAGCAGGTTCATTGTCATGTGATGAAGTTTGGTTTTGATGAAGGGAGTGTGCATGTTCAATCTGCTTTGATTGATATGTATGGAAAGTGCATGGACATTGAGAGTTCTGTGAATGTATTTGAATGCCTTCCCAAGAGAACTTTGGATTGTTTCAACTCATTGATGACCTCTTTGTCTTATTGTGATGCGGTTGACGATGTGGTTGAATTGTTTGGTTTGATGTTTGACGAGGGTCTTGTGCCGGATGGAGTTACCTTATCAACCACACTGAGGGCATTGTCAGTGTCCACTTTAGCAAGTTTTACGAGTTCCCAGTTACTACATTGTTATGCATTAAAATCTGGACTTGGAGGAGATGCTGCAGTTGCATGTTCCCTCGTGGATTCATATTCAAGATGGGGCCATGTGGAGCTTTCTCGTCGAATTTTTGAGAGTCTTCCTTCTCCAAATGCTATTTGCTTCACATCCATGATCAATGCATATGCCCGAAATGGAGCGGGGAAAGAAGGAATTGCAGTGCTTCAAGCTATGATTGAGAGGGGACTAAAGCCTGATGATGTTACCTTATTATGTGCACTAAATGGTTGTAACCACACAGGATTAGTTGAGGAAGGAAGATTAGTCTTTGAATCGATGAAATCTCTTCATGGGGTCGATCCAGATCACCGCCATTTTTCATGCATGGTGGATCTCTTTTGCCGTGCAGGACTTCTACATGAAGCTGAAGAGTTGCTGCTACAGGCACCGGGAAAAGGAGACTGTTTTATGTGGAGCTCTTTGCTGAGAAGTTGCAGGGTCCACAAGAATGAAGAGGTTGGAACAAGAGCAGCACAAGTGTTAGTTGAGCTAGATCCAGATGACCCTGCAGTGTGGTTGCAAGCTTCAATTTTTTATGCTGAAATAGGGAATTTTGATGCATCAAGGCAAATCAGAGAGGTTGCTCTATCAAGGAAGATGACTAGGGAAATTGGTCATACAGCTCATGGAGTTGCAGGAAGCATGATGTGTGACAACATTGGCATGCTTGAAGAACTTAAAAGCCTTGAGGCCCTGGACATAGAAGAAGAAAATGAGGTTGGACTTTCTGACATCCCTTCATGGAGAAGTGAGCATGGTGGAAAAGTTCTGGTGAATATTGATAGCTTTGGTGCTGCTGGAGATGGAGAATCTGATGATACTGAGGCTTTACAAAAAGCATGGGGAGTTGCATGCTCTACACCAAAATCTGTTTTGTTAATTCCTCAAGGACGCCGTTACCTAGTTAATGCAACAAAATTCAGAGGGCCTTGTGAAGACAAGCTCATCATCCAGATTGATGGTACTTTGGTTGCACCAGATGAGCCTAAGAACTGGGATCCAAAACTACCACGGGTTTGGCTTGATTTTTCCAAATTGAACAAAACTATTTTCCAAGGTTCTGGAGTTATTGATGGCTCAGGAAGCAAATGGTGGGCGGCATCTTGCAAAAAGAACAAGTCCAATGTAATTTTTGCAAAACATGGTGCATTTACAATTGATACAAGTTCATCCATAAGGGTGAAAGGACTAACAATCCAGAATAGCCAACAGATGCATTTTACTATATCACGATGTGATTCTGTTAGAATTACTGGCGTGAAAGTGTCAGCACCTGGAGACAGCCCAAACACTGATGGAATTCATATTAGTGAATCAACAAATGTCATAATCCAAGACAGCAAAATTGGAACAGGGGATGATTGCATATCAATTGTCAATGCTAGCTCTAATATCAAAATGAAGAGAATTTATTGTGGACCAGGACATGGAATCAGCATTGGAAGTCTAGGGAAAGACAACTCAACAGGCATAGTCACGAAAGTGATTTTGGATACAGCAGTTCTTAGGGAGACTACCAACGGTCTCAGAATTAAGACTTGGCAGGGAGGTTCTGGATATGTTCGAGGGGTGCGTTTTCAGAATGTGAGGGTGGAAAATGTATCCAACCCCATTATTATAGACCAATTTTACTGTGATTCTCCAACCAATTGTGAAAATCAGGCATCAGCAGTGGAGATAAGCGAGGTGATGTACCAGAACATAAGTGGCACTACAATGAGTGCTAAGGCCATTAAATTTGACTGCAGTGACTCAGTCCCATGCAGCAAACTAGTCCTTAGCAACGTTGACTTAGAGAAACAAGATGGCTCTGTTGAAACATATTGCCACTCAGCACAAGGCTTTCCCTATGGTGTGGTTCACCCTTCTGCTGATTGCCTTAGTTCAAGTGACAAAACATCTCAAATTGAAGAGTCAACTATAGAGGAAGAAGATATTCGTCACACTGAACTATAA 3285 0.435 MQKPLLHSFIRAITTLTPIPPHTFLHLHNPSDSVIYLKNREIDAFIKLRNLNAALAVFHTTPLRDTVTYNLIISAFRNQPNHALRFYAEMGLRGIRESPTTLTSVIAVCTNAMFFKEGVQVHCRVIKFGFTCNVFVGGALVGFYAHVGECGVALDLFDELPERNLAVWNVMLRGLCELGRVNVEDLMGFYYPRMLFEGVQPNGVTFCYLLRGCGNQRRLEEGKKIQGCVLKMGLVESSVFVANALVDFYSACGCFVGARRCFEDIENEDVISWNSLVSVYAENNMLIEALEVFCVMQVWRKRPSIRSLVGLLNLCSRSGELCLGKQVHCHVMKFGFDEGSVHVQSALIDMYGKCMDIESSVNVFECLPKRTLDCFNSLMTSLSYCDAVDDVVELFGLMFDEGLVPDGVTLSTTLRALSVSTLASFTSSQLLHCYALKSGLGGDAAVACSLVDSYSRWGHVELSRRIFESLPSPNAICFTSMINAYARNGAGKEGIAVLQAMIERGLKPDDVTLLCALNGCNHTGLVEEGRLVFESMKSLHGVDPDHRHFSCMVDLFCRAGLLHEAEELLLQAPGKGDCFMWSSLLRSCRVHKNEEVGTRAAQVLVELDPDDPAVWLQASIFYAEIGNFDASRQIREVALSRKMTREIGHTAHGVAGSMMCDNIGMLEELKSLEALDIEEENEVGLSDIPSWRSEHGGKVLVNIDSFGAAGDGESDDTEALQKAWGVACSTPKSVLLIPQGRRYLVNATKFRGPCEDKLIIQIDGTLVAPDEPKNWDPKLPRVWLDFSKLNKTIFQGSGVIDGSGSKWWAASCKKNKSNVIFAKHGAFTIDTSSSIRVKGLTIQNSQQMHFTISRCDSVRITGVKVSAPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSLGKDNSTGIVTKVILDTAVLRETTNGLRIKTWQGGSGYVRGVRFQNVRVENVSNPIIIDQFYCDSPTNCENQASAVEISEVMYQNISGTTMSAKAIKFDCSDSVPCSKLVLSNVDLEKQDGSVETYCHSAQGFPYGVVHPSADCLSSSDKTSQIEESTIEEEDIRHTEL 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02680 1094 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Gma08g02680 1094 Pfam PPR repeat 541 569 IPR002885 -
Gma08g02680 1094 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 201 IPR002885 -
Gma08g02680 1094 PANTHER - 679 1079 - -
Gma08g02680 1094 MobiDBLite consensus disorder prediction 1079 1094 - -
Gma08g02680 1094 Pfam PPR repeat family 473 520 IPR002885 -
Gma08g02680 1094 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Gma08g02680 1094 Gene3D - 690 1093 IPR012334 -
Gma08g02680 1094 SUPERFAMILY TPR-like 486 642 IPR011990 GO:0005515
Gma08g02680 1094 SUPERFAMILY Pectin lyase-like 699 1070 IPR011050 -
Gma08g02680 1094 SMART pbh1 964 985 IPR006626 -
Gma08g02680 1094 SMART pbh1 855 881 IPR006626 -
Gma08g02680 1094 SMART pbh1 882 903 IPR006626 -
Gma08g02680 1094 SMART pbh1 905 925 IPR006626 -
Gma08g02680 1094 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Gma08g02680 1094 Pfam Glycosyl hydrolases family 28 732 1053 IPR000743 GO:0004650|GO:0005975
Gma08g02680 1094 PANTHER BNAA08G20470D PROTEIN 679 1079 - -
Gma08g02680 1094 ProSitePatterns Polygalacturonase active site. 912 925 IPR000743 GO:0004650|GO:0005975
Gma08g02680 1094 TIGRFAM PPR: pentatricopeptide repeat domain 271 301 IPR002885 -
Gma08g02680 1094 TIGRFAM PPR: pentatricopeptide repeat domain 476 509 IPR002885 -
Gma08g02680 1094 MobiDBLite consensus disorder prediction 1071 1094 - -
Gma08g02680 1094 Gene3D Tetratricopeptide repeat domain 452 664 IPR011990 GO:0005515
Gma08g02680 1094 Gene3D Tetratricopeptide repeat domain 37 189 IPR011990 GO:0005515
Gma08g02680 1094 Gene3D Tetratricopeptide repeat domain 190 328 IPR011990 GO:0005515
Gma08g02680 1094 Gene3D Tetratricopeptide repeat domain 329 425 IPR011990 GO:0005515
Gma08g02680 1094 Pfam PPR repeat 271 297 IPR002885 -
Gma08g02680 1094 Pfam PPR repeat 374 403 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02680 Gma-Chr8 41972022 41979408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02680 689 1094 Glycoside Hydrolase AT1G23460 71.675 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02680 - - pvu:PHAVU_003G061700g 1826.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02680 08 41972022 41979408 Gma08g02680 08 41972022 41979408 ECH