LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma08g02449	ATGTGGACCAACCTAGCCAAGCGAGCTTCCTCAACCTTAAGGAACACCTTCCGCGTTTCTTCTTTATCTCCGAGATTCTGTAAGCCCCAAACAAGTAAAACGATAAACCCATACCCATTTCAGGCTTTCCCTAAAGCCGGGGTGAGCCGGTCCAAGTTTCTTTTTTACGAAGGCTTTTCTAGCGTTGCCGAGGCTATTGAGTCCACGGACACCGAAGATGACTACGACGAGGTTCAGAAATTGTTGCAGCAAATGGCGAAGGCAGAACACAAAGTGGACAACAGCAGCAGCAGTAGCAGCTACAAGTACAAGTTGCTTAAGAGGAGGCAGATAAAATCGGAGACGGAGGCGTGGGCAGAAGCCGCAAGGGAGTATGAGGAGCTCTTGGAGGACATGCGCGAGCAGAAGCTTGCGCCCAATTTGCCTTACATGAAGTCACTCTTCTTGGGTTGGTTTGAGCCCTTAAGGAATGCAATTCTCGCTGATCAAGAGCTTTGCAAGGATAGCAAGTGCAGGATGAGCCATGCTCCTTATTTCAATGACTTGCCCGCCGACATGATGGCTGTTGTCACCATGCACAAGTTGATGGCCTTGTTGATGACAAATACTAATGGGGTTGGCACCGCTCGGGTCATTCAAGCCGCTTGTCAAATAGGTGAAGCTGTTGAGAACGAGGCTAGGATATACCAATTTATGAAGAGGGAGAAGGAGAACAAATCATCTCATGTTGTGCCGGTAGAACAAAGAGGAGAACTGACTGAAGAGAACGGGGAAATGGATAAAAAGCAGAGCAGACTTCGGAAAAGAGTTGCTGCTTTGATGAAAAAACAGAAGAAGCTACAAGCAATGGGAATAGTCCGAGGACAAGATGATTGGAAAGCTTGGGGACAAGAAGCTCAAGTAAAGGTTGGATCTCGATTGATGCAACTATTAATAGAAACAGCCTACATTCAACCGCCTGCCAATCTGATTGGAGATGGTCCACCGGATATACGACCCGCATTTAAGCATACCCTTAAAACACTTTCATCTGAGTCACAGAAGGAAACTAGGAGATATGGTGTCATTGAATGTGATCCTCTGGTGCAAAATGGCCTTGAAAAGTCTGCAAGGCACATGGTCATCCCCTATATGCCAATGTTGGTGCCACCTATAAACTGGACAGGGTATGACAAAGGAGCATACTTGTTTTTGCCATCGTATGTTATGAGAGTACATGGAGCAAAGCAGCAACGTGAAGCAGTTAAGAGGGCTCCCAAGAGTCAACTTGATCCTGTTTTTGAGGCCCTTAATACCCTTGGCAGTACCAAATGGAGGGTAAACAAAAGGGTACTCTGTGTGATAGATCAAATATGGGCTAATGGAGGACGCCTGGCTGATTTGGTGGATCGTGAAAATGTTCCCGAACCTAAGGAACCAGATACAAAAGATGAAGCAGAAATCCGAAAATGGAAGTGGAAAGTCAAAGCTGTGAAAAAGGAGAATAACGAGAGACATTCACAGCGATGTGACATAGAACTTAAACTTGCTGTTGCTCGAAAGATGAAGGATGAAGAAGGCTTCTATTATCCTCACAATCTTGATTTTCGAGGGCGAGCTTATCCCATGCACCCATATTTGAACCATCTTGGTTCTGACTTATGCCGAGGCATACTTGAGTTTTCAGAGGGACGTCCTTTAGGGAAGTCAGGCTTGTGCTGGTTAAAAATACATCTTGCAAATTTGTATGCTGGTGGTGTTGACAAGTTATCTTATGATGGTCGAATAGAATTTACTGAGAACCACCTGGATGATATATTTGATTCTGCAGACAGACCTCTTGAAGGAAAGCGCTGGTGGTTGCAAGCAGAGGATCCTTTTCAGTGCTTGGCAGCATGCACCAATCTCTCTGAAGCATTGAGAAGCCCCACTCCTGAGACTACCATTTCTCATATGCCAGTACACCAGGATGGTTCATGCAATGGCTTACAACACTATGCAGCACTGGGGAGGGACAAGaatggtcttttcaaatga	2016	0.4539	MWTNLAKRASSTLRNTFRVSSLSPRFCKPQTSKTINPYPFQAFPKAGVSRSKFLFYEGFSSVAEAIESTDTEDDYDEVQKLLQQMAKAEHKVDNSSSSSSYKYKLLKRRQIKSETEAWAEAAREYEELLEDMREQKLAPNLPYMKSLFLGWFEPLRNAILADQELCKDSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTNTNGVGTARVIQAACQIGEAVENEARIYQFMKREKENKSSHVVPVEQRGELTEENGEMDKKQSRLRKRVAALMKKQKKLQAMGIVRGQDDWKAWGQEAQVKVGSRLMQLLIETAYIQPPANLIGDGPPDIRPAFKHTLKTLSSESQKETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMRVHGAKQQREAVKRAPKSQLDPVFEALNTLGSTKWRVNKRVLCVIDQIWANGGRLADLVDRENVPEPKEPDTKDEAEIRKWKWKVKAVKKENNERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLCWLKIHLANLYAGGVDKLSYDGRIEFTENHLDDIFDSADRPLEGKRWWLQAEDPFQCLAACTNLSEALRSPTPETTISHMPVHQDGSCNGLQHYAALGRDKNGLFK	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma08g02449	671	SUPERFAMILY	DNA/RNA polymerases	99	668	IPR043502	-
	Gma08g02449	671	MobiDBLite	consensus disorder prediction	240	265	-	-
	Gma08g02449	671	PANTHER	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	48	668	IPR002092	GO:0003677\|GO:0003899\|GO:0006351
	Gma08g02449	671	Gene3D	-	436	518	IPR024075	GO:0003899
	Gma08g02449	671	Pfam	DNA-directed RNA polymerase N-terminal	109	435	IPR029262	-
	Gma08g02449	671	Coils	Coil	115	135	-	-
	Gma08g02449	671	SMART	RPOL_N_2	108	435	IPR029262	-
	Gma08g02449	671	Pfam	DNA-dependent RNA polymerase	558	668	IPR002092	GO:0003677\|GO:0003899\|GO:0006351
	Gma08g02449	671	ProSitePatterns	Bacteriophage-type RNA polymerase family active site signature 1.	646	657	IPR002092	GO:0003677\|GO:0003899\|GO:0006351
	Gma08g02449	671	Gene3D	-	558	636	-	-
	Gma08g02449	671	Coils	Coil	78	98	-	-
	Gma08g02449	671	Gene3D	-	66	434	IPR037159	-
	Gma08g02449	671	PANTHER	DNA-DIRECTED RNA POLYMERASE	48	668	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma08g02449	Gma-Chr8	29327297	29334307	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma08g02449	K10908		-	gmx:100814762	1316.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma08g02449	08	29327297	29334307	Gma08g02449	08	29327297	29334307	ECH