Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02154 ATGGACTGGAAATGGCATAAAGATCACTGCATTGCAAGAGTCGTGGATTCAACTCCAATAGAAAGACCTTGTAGAGATGTTGGATTGCTCAAGAATTCATATGAAGAGGAAGAGAATATTCCTTCATCTGGTCCCCTTTCTTTGGTGTTTCATCCAGTTGCTTGTGTTGAAGAATATGAAAAGGAATCAATAGCAGAGGCTGAAACTAGAGCTTGTAATGTGATTCACAGTTTACATGAAAGGCTAACCCACTTGCAGAATGTAGTGCAAGAAAACATTGCAGAGAAGAGAAAGCTAGAAGAAGATTTACAAAATTTAGAGAGTGAATGTTCTGACTTGAAGAAACAACTGCAAGAAGAGCATAAATGTGCTCAACGTCTTACAATTGAATTTGACAAGCGTCGTGAGGCTGCACAAATTGCCATGAGAGAAGTTGAAGCTGTAAGACAAGTGTTACAAGAAGAGCGAGAACATACTCAACGAGTTAAGGAGAATTTTCGTAGAGATGTTATATTTGTTGAAGCCAGAGCTACCTTTGCTGAGGTTTGTTCTATATGCCTCTCCAATGAAAAGGACTTGGTCTTTGGTTGTGGACACATGACTTGTAGAGACTGTGGATCGAAGTTATCGAAGTGTCCTATATGCCGTGAACAGATCACAAACCATATTAAGCTATTTCCTGGGTGA 687 0.3959 MDWKWHKDHCIARVVDSTPIERPCRDVGLLKNSYEEEENIPSSGPLSLVFHPVACVEEYEKESIAEAETRACNVIHSLHERLTHLQNVVQENIAEKRKLEEDLQNLESECSDLKKQLQEEHKCAQRLTIEFDKRREAAQIAMREVEAVRQVLQEEREHTQRVKENFRRDVIFVEARATFAEVCSICLSNEKDLVFGCGHMTCRDCGSKLSKCPICREQITNHIKLFPG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02154 228 PANTHER PROTEIN, PUTATIVE-RELATED 181 226 - -
Gma08g02154 228 Pfam Zein-binding 112 180 IPR007656 -
Gma08g02154 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 227 IPR013083 -
Gma08g02154 228 PANTHER COPINE FAMILY PROTEIN 1 2 180 - -
Gma08g02154 228 ProSiteProfiles Zinc finger RING-type profile. 183 216 IPR001841 -
Gma08g02154 228 SUPERFAMILY RING/U-box 182 222 - -
Gma08g02154 228 Coils Coil 135 169 - -
Gma08g02154 228 Coils Coil 82 123 - -
Gma08g02154 228 PANTHER PROTEIN, PUTATIVE-RELATED 2 180 - -
Gma08g02154 228 PANTHER COPINE FAMILY PROTEIN 1 181 226 - -
Gma08g02154 228 SMART ring_2 183 215 IPR001841 -
Gma08g02154 228 Pfam Zinc finger, C3HC4 type (RING finger) 181 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02154 Gma-Chr8 19988128 19991567 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02154 - K16280 gmx:100811876 287.345