Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02065 ATGGCTCTGGTCGGAGTTGAAGTGAAGCATGCGGCGGAGGGCGCACCGGAGGAGAATTGCTCCGCCAAGCCCACCAAGCAGGGCGAGGGCCTCCGCCACTACTATTCTCACAACATCCACGAGCATCAGCTCCTTCTCCGTCAAAAGACGCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATGTTCTTCACTTAGTTCTGCCAAGTAAAGTTGATCCATTGGTCAATCTGATGAAAGTTGAGAAGGTTCCCGATTCTACTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAGGGTGTCCTGCTCTATGGGCCACCTGGTACAGGAAAAACATTGTTGGCTAGGGCAGTGGCTCATCATACTGACTGTACATTCATCAGGGTGTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGTACTATGCTGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGAAGACGAAGCAGCCACTGGCACTGAACAATTATCCTTTGATGGAGTTGGCTTTTCATTCAGCCCTGTACCCAGCATCTCTGTCTTGTCGAGCGAGGAGGTTGTCCTTGGTGCCTTGTGCATTGAAGACACGCTCTTGTATCGAGGAGGCTCTGGTGAGTGTGGAAGCATGCAACATGGCATCTCACCCTATCAATTTCTCCAAGTTGGATGGAACATGGCGCCTCCAGTACACTTCTTCCTCTGATGTTCTCGTTCTTCTCCAAGCTGCTGCTACACTTCCTTTCTTTCAAGTTGGACAGATCTTTCAAAAATTTGAATGTGGTGATCAATCCCATGGAGGTGTTATCCGCAATGTTGTTCGATGGAGTATTCCAAATTTGTTAGAGGAACAAGAAGGTGCTACACTGCTTGTATCCGCCAAGTTTAATGTTGTATCTGTCCGTAATATCTACCTTCAGTTTCAAGAGATCACATCTTCAGATTTTGCAATTTCTCCACACTTTCAAAGCTTAGATCCCTGTGAGGGAACCAGGAAGGCAATCAGTCGGAGGACCAGTGGCGGATCTAAGACCCTGAGTTAA 1785 0.456 MALVGVEVKHAAEGAPEENCSAKPTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKKTKQPLALNNYPLMELAFHSALYPASLSCRARRLSLVPCALKTRSCIEEALVSVEACNMASHPINFSKLDGTWRLQYTSSSDVLVLLQAAATLPFFQVGQIFQKFECGDQSHGGVIRNVVRWSIPNLLEEQEGATLLVSAKFNVVSVRNIYLQFQEITSSDFAISPHFQSLDPCEGTRKAISRRTSGGSKTLS 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02065 594 Pfam Proteasomal ATPase OB C-terminal domain 84 139 IPR032501 -
Gma08g02065 594 Pfam ATPase family associated with various cellular activities (AAA) 197 330 IPR003959 GO:0005524|GO:0016887
Gma08g02065 594 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 24 467 - -
Gma08g02065 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 407 IPR027417 -
Gma08g02065 594 Coils Coil 39 73 - -
Gma08g02065 594 CDD AAA 163 330 - -
Gma08g02065 594 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 43 401 IPR005937 GO:0005737|GO:0030163|GO:0036402
Gma08g02065 594 Pfam AAA+ lid domain 354 396 IPR041569 -
Gma08g02065 594 SMART AAA_5 193 333 IPR003593 -
Gma08g02065 594 Gene3D - 336 412 - -
Gma08g02065 594 PANTHER BNAA02G04630D PROTEIN 24 467 IPR035261 GO:0036402
Gma08g02065 594 Pfam PAP_fibrillin 443 587 IPR006843 -
Gma08g02065 594 Gene3D - 37 149 IPR012340 -
Gma08g02065 594 ProSitePatterns AAA-protein family signature. 301 319 IPR003960 GO:0005524|GO:0016887
Gma08g02065 594 Gene3D - 150 331 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02065 Gma-Chr8 18525274 18532102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02065 158 439 Miscellaneous Gene Families AT5G58870 38.721 8.45e-54 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02065 K03066 - gmx:100776268 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00019 07 187966 190656 Gma08g02065 08 18525274 18532102 GST