Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01969 ATGTCTTCTCTCAGTAGGGAATTGGTGTTCCTGATCTTGCAGTTTCTCGATGAGGAAAAGTTCAAGGAGACTGTGCACAAGCTTGAGCAGGAGTCAGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAatggcaattgggatgaggtggagaaatacctctctggtttcacaaaggtggatgataataggtattccatgaagatattttttgagataaggaagcagaagtatctggagGCTTTAGATAAGCATGACCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAATGAAGAATTGTTCAAGGAAATCACACAGCTTCTTACATTGGAAAATTTCAGGGAAAATGAGCAATTGTCTAAGTATGGTGATACAAAATCTGCACGAGCAATCATGTTGGTTGAGCTCAAAAAGCTAATTGAAGCGAATCCCTTATTTCGTGACAAACTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGAGCTCCATCACCTGCTAATAACCCGCTATTAGGTGCCTTACCAAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTTTTCAGCCTACTCCAGCACCGGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCTACCACTGTAGCACATGCCGCAGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCTATGCCTGCTGCTTTGAAGCATCCTAGGACCCCCCCAACTAATCCTTCTGTTGACTATCCATCTGGAGACTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATATCAGATGAGGTAAATCTTCCTGTCAATGTGTTGTCAGCTACATTCCCAGGTCATGGTCAACATAGTCAAGCTTTTAATGCACCTGATGACATACCTAAGACTGTTGTGCGAACTCTTAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAATGCAACAATCTTTACTTCTTGTTGGTACACATGTGGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCAAGGAATTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCGGGTGTTTCTGTCAATCGTGTAATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACTCTTACCATGGTGGGGATGAAATACGACAGCACCTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTGGCATTTTCCCATCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAAACCATTAAGGTATGGGATGCTGCTTCGGGTGCAAagcagtatacttttgaaggtcatgaggctcctgtttatTCTGTCTGCCCACATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAATCCTCCATTGTTGAATGGAATGAAAGTGAAGGAGCTGTTAAAAGGACTTATCAAGGATTTCGCAAGCGATCTTTGGGTGTTGTGCAATTTGATACTACCAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACTACTGTTGATGCTGATGGGGGTCTCCCTGCGAGCCCACGCATTCGCTTCAACAAGGATGGAACACTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGTTTGTTGCGTACGCTAGAGAATTCTTTATATGAAGCATCAAGAGCATCTGAAGCCTTGACAAAGCCTACAATTAATCCAATTTCTGCTGCTGCCGCTGCTGCAACCAGTGCTGCACTGGCAGAGAGGGCTTCATCTGTAGTAGCTATTGCTGGAATGAATGGGGATACCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACAATCTCAATGTAGATCCTTGAAACTACCGGAGAATGTAAGAGTAACCAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTGCTCTGGAAATGGCAGCGAAATGAGCGTAACTCATCTGGCAAGGCCACTGCTACCTTGCAACCTCAGTTGTGGCAACCATCGAGTGGCATCCTGATGACAAATGACATTGCTGATAGCAATCCTGAGGATGCTGTACCCTGCTTTGCGTTGTCCAAAAATGACTCGTATGTAATGTCTGCATCAGGAGGGAAGATATCTCTGTTTAATATGATGACTTTTAAGACTATGACAACTTTCATGCCTCCGCCACCTGCGGCAACCTTTCTAGCTTTCCATCCTCAGGATAACAATATTATCGCTATAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCTGATGCTCAGATTTGTGTTTGGAATACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTCCTGGGAGAACACCACCAGCACAGTCAGATACCCGTGTACAATTTCATCAAGATCAAATACAGTTCTTGGTTGTACATGAAACTCAGCTCGCCATTTATGAAGCAACTAAATTAGAAGGACTAAAGCAGTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTGATAGCCAGCTGGTATTTGCCAGCTTTTTAGATGCAACAATCTGTGTATTTAGTGCTTCAAACCTCAGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCAGTTTGCTTTAGGACTGTCGGACGGTGGAGTTCATGTTTTTGAACCCCTTGAATCTGAAGGCAAGTGGGGTGTGCCTCCTCCGATTGAGAATGGGTCTGCAAGCAATGTGGCAGCTACTTCAGTTGGACCTTCAGATCAAGCTCAAAGATGA 3402 0.4103 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKTVVRTLNQGSSPMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTINPISAAAAAATSAALAERASSVVAIAGMNGDTRNLGDVKPRISEESNDKSKIWKLTEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLRCRINPSSYLPASVSSNIQPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAATSVGPSDQAQR 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01969 1133 Gene3D - 811 1098 IPR015943 GO:0005515
Gma08g01969 1133 MobiDBLite consensus disorder prediction 1116 1133 - -
Gma08g01969 1133 SMART Lish 4 36 IPR006594 GO:0005515
Gma08g01969 1133 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
Gma08g01969 1133 Gene3D - 331 546 IPR015943 GO:0005515
Gma08g01969 1133 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Gma08g01969 1133 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 921 953 - -
Gma08g01969 1133 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Gma08g01969 1133 MobiDBLite consensus disorder prediction 1105 1133 - -
Gma08g01969 1133 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 939 1118 - -
Gma08g01969 1133 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1133 IPR027728 GO:0006355
Gma08g01969 1133 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 424 958 IPR011047 -
Gma08g01969 1133 SMART WD40_4 406 445 IPR001680 GO:0005515
Gma08g01969 1133 SMART WD40_4 495 536 IPR001680 GO:0005515
Gma08g01969 1133 SMART WD40_4 539 582 IPR001680 GO:0005515
Gma08g01969 1133 SMART WD40_4 871 911 IPR001680 GO:0005515
Gma08g01969 1133 SMART WD40_4 585 625 IPR001680 GO:0005515
Gma08g01969 1133 SMART WD40_4 451 492 IPR001680 GO:0005515
Gma08g01969 1133 SMART WD40_4 914 953 IPR001680 GO:0005515
Gma08g01969 1133 SMART WD40_4 1006 1046 IPR001680 GO:0005515
Gma08g01969 1133 SMART WD40_4 831 868 IPR001680 GO:0005515
Gma08g01969 1133 SMART WD40_4 345 384 IPR001680 GO:0005515
Gma08g01969 1133 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1133 - -
Gma08g01969 1133 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 634 IPR001680 GO:0005515
Gma08g01969 1133 SUPERFAMILY WD40 repeat-like 345 454 IPR036322 GO:0005515
Gma08g01969 1133 MobiDBLite consensus disorder prediction 285 304 - -
Gma08g01969 1133 ProSiteProfiles Trp-Asp (WD) repeats profile. 921 962 IPR001680 GO:0005515
Gma08g01969 1133 Pfam WD domain, G-beta repeat 458 492 IPR001680 GO:0005515
Gma08g01969 1133 Pfam WD domain, G-beta repeat 920 953 IPR001680 GO:0005515
Gma08g01969 1133 Gene3D - 547 693 IPR015943 GO:0005515
Gma08g01969 1133 SMART ctlh 34 92 IPR006595 -
Gma08g01969 1133 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 501 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01969 Gma-Chr8 17653883 17662346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01969 456 669 Miscellaneous Gene Families AT5G08390 23.744 5.56e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01969 - - gmx:100795759 2243.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00262 07 2295132 2302497 Gma08g01969 08 17653883 17662346 ECH
Gma08g01969 08 17653883 17662346 Gma08g01969 08 17653883 17662346 ECH
Gma07g00262 07 2295132 2302497 Gma08g01969 08 17653883 17662346 GST