Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01839 ATGGGGGGCTCGGAAGGGGTGGGAGCATCGTCGAAGCAATTCGGTGTCACGAAGCCCATATCAATGGCTGGCCCAACGGTTACTGATTTGCAGAGGACTCGTGAGTTAGAGAAGTTTCTCGCTGTTTCGGGGCTTTACGAGAGCAAGGAGGAAGCTGCCAAAAGGGAAGAGGTTCTTCACCGACTTGGAGAGATAGTGAAAAATTGGGTGAAGCAACTTACCCGCCTTAGGGGATACACTGATCAAATGGTGGAAGATGCAAATGCTGTCATTTTGACTTTTGGTTCTTATCGGCTTGGTGTTCATGGTCCTGGGGCTGATTTAGACACTTTATGCATTGGGCCGTCCTATGTAAACCGGGAGGAGGATTTTTTCTACACATTGCATGATATCTTAGCTAACATCGAGGAAGTCACAGAACTGCAACCAATTCCGGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGATCTCCTCTATGCCAGTATTTCTCGATTGATTGTACCTGAAGACTTGGATATATCTGATGTCTCTGTTCTACACAATGTTGATGAGCCTACCGTGCGAAGTTTGAATGGCTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCTAATGTTGAGCACTTTCGCACAACACTTCGTTGCTTGAAATTTTGGGCCAAAAGGCGAGGCATTTATTCTAATGTGACAGGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTCGAGTGTGCCAGTTTTATCCAAAAGCAGTTCCAAGTATGCTTGTTTCTAGATTCTTCAGGGTATATACACAGTGGCGGTGGCCAACTCCTGTCATGTTATGTCCAATAGAGGAGAATGATCTTGGGTTTCCTGTTTGGCATCCTGGTAAAAATCCTCGTGACAGATCCCATCATATGCCAATCATTACCCCTGCCTATCCCTGTATGAATTCTAGTTATAATGTTTCTATGAGCACACTTCGTGTGATGATGGAGCAGTTCCAATATGGCAATAAAATCTGTGGGGAAATAGAATTGAGTAAAGATTGTTGGAAGGCTCTGTTTGAAAAGTATAGTTTCTTTGAAAGCTATAAAAACTACTTGCAAGTTGATGTAGTTGCTGCTGATGCCGATGACTTGCGCAGCTGGAAAGGTTGGGTGGAATCACGCCTTCGCCAGCTGACTTTGATGATTGAACGTGATACTTTTGGGAAGTTGCAATGTCATCCCTATCATCATGAGTTTGTCGATACTTCAAGGCAGTGTGCCCATTGTGCTTTCTTTATGGGTTTGCATAGGAAAGAGGGAGAAGTTGTTCAAGAAGGCCAGCAATTTGATATACGAGGGACAGTTGAAGAATTTCGGCATTCTGTTAATATGTACATGTTCTGGAAACCAGGGATGGAGATTTATGTTTCTCATGTTCGTAGAAGGCAAATTCCATGCTATGTGTTTCCTGATGGTTATAAACGATCTCGGCCATCAAGGCCAACATCACAATTTGAGAATTGTAAATCATTTCATAATAATGAGGTTTCTGTGACTGAACATGTGGAGAGAATCCGTAAGAGGAAGAACAATGATGGTGTGGATGTGAGGGAGGATGCTATAGTTAAAAGGCAATATGCTTGTCCTCCTGGGGATAGATTGGCAAGACGCAACAGCCTTGGTACTGGTGGTTTGTCTGTTGAAGCTGTATCTGATAGTCAAGAGTTGAGAAGTGTGGAGTGCAATCATTTGTCAAACAGTGGGCAAGATGATTTGGATAGAACAGAGTCTCCTGAAGCTGCTTCAAATTCTAGTGTGATTACATCTGTTGGTTCTTCTGAAGATATTGTATCTGTGTCAGTGGCTGGTTGTGTTGAGAACTCCAGGGGTGTTGAAATGATGAACAATGGAAGGTTTGAGGATACTACTTATGGGAATGATTCTGTCACACTGGTGAAAAATATAGTGGCCAGTGGAAATGAAGTGTTTCAGCATGAGCTACAGCAGCAGTTGCAGCCGAATGCAATGCTAGGGATGGTTCTTGATTCTGCAGAAAAGGTTCTCTCAGAAGCTGTGCAAGAGCCGGTGATAAGGCATGTTCTTGTTTATTAA 2106 0.4307 MGGSEGVGASSKQFGVTKPISMAGPTVTDLQRTRELEKFLAVSGLYESKEEAAKREEVLHRLGEIVKNWVKQLTRLRGYTDQMVEDANAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTLHDILANIEEVTELQPIPDAHVPVMKFKFDGISIDLLYASISRLIVPEDLDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQFYPKAVPSMLVSRFFRVYTQWRWPTPVMLCPIEENDLGFPVWHPGKNPRDRSHHMPIITPAYPCMNSSYNVSMSTLRVMMEQFQYGNKICGEIELSKDCWKALFEKYSFFESYKNYLQVDVVAADADDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPYHHEFVDTSRQCAHCAFFMGLHRKEGEVVQEGQQFDIRGTVEEFRHSVNMYMFWKPGMEIYVSHVRRRQIPCYVFPDGYKRSRPSRPTSQFENCKSFHNNEVSVTEHVERIRKRKNNDGVDVREDAIVKRQYACPPGDRLARRNSLGTGGLSVEAVSDSQELRSVECNHLSNSGQDDLDRTESPEAASNSSVITSVGSSEDIVSVSVAGCVENSRGVEMMNNGRFEDTTYGNDSVTLVKNIVASGNEVFQHELQQQLQPNAMLGMVLDSAEKVLSEAVQEPVIRHVLVY 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01839 701 MobiDBLite consensus disorder prediction 582 605 - -
Gma08g01839 701 PANTHER NUCLEAR POLY(A) POLYMERASE 4 1 594 - -
Gma08g01839 701 CDD NT_PAP_TUTase 54 209 - -
Gma08g01839 701 Pfam Poly(A) polymerase predicted RNA binding domain 361 420 IPR007010 GO:0003723|GO:0043631
Gma08g01839 701 Pfam Nucleotidyltransferase domain 88 163 IPR002934 GO:0016779
Gma08g01839 701 Gene3D Poly(A) polymerase predicted RNA binding domain 361 477 - -
Gma08g01839 701 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 358 - -
Gma08g01839 701 SUPERFAMILY Nucleotidyltransferase 12 208 IPR043519 -
Gma08g01839 701 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 360 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Gma08g01839 701 Gene3D - 15 357 - -
Gma08g01839 701 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0004652|GO:0043631
Gma08g01839 701 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Gma08g01839 701 PANTHER POLY A POLYMERASE 1 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01839 Gma-Chr8 16507456 16512689 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01839 K14376 - gmx:100783237 1400.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01839 08 16507456 16512689 Gma08g01839 08 16507456 16512689 ECH