Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01809 ATGAGTGGGCCAGACACTCCTCTCGCTCACGCTCTCAGCCTCGGCCCAAATATAAAACCCCAACACACAGAAAGAAGGAAAGGCCTCAATATCTTTCGTTTCGTTTTGCCCTTTCTTCAAGCCAACCTCTTCACAACTCTTCTTTGTTCCTTTCTTCCTCTCACTACCACCATGATCACAGTAAGCGTAAGATGGCAAAAGGAGATTTTCAAAGATGTAGAACTTGACACTACCCAGTCTGCTTATGTTTTTAAATGCCAATTGTATGATTTGACTGGTGTGCCTCCTGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTGAAGGATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAGGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTGAAGACTCCTGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCAGAAGAAGAACAAGTAGTTGCTGTTGGACATACTGCTGGTCTTTTCAACTTGGGAAACACATGTTATATGAATTCAACATTGCAATGCCTCCATTCCGTACCTGAGTTAAAGTCAGCTTTGACTAATTATTCACATTCAGGACGAAACAACGATGTCGATCAATCTTCTCATTTGTTGACCATTGCAACCCGTGACTTGTTCAACGAGCTTGATAAAAGTGTGAAGCCTGTGGCGCCAATGCAATTTTGGATGGTATTGCGGAAAAAATATCCTCAATTTGGCCAGCTGCATAATGGAGTTTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTATACACTCTCTCTCAGTCCCTCAGATCCCTTGGAATTAGTGAAAATCCCGATGCTGTGAAGGCACTCTTTGGCATAGAACTTATTAGCAGGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTATTCACTTAAATGCCACATATCACAGGAGGTGAACCATTTGCACGAAGGGATAAAACATGGGTTAAAATCTGAGTTAGAAAAGGCTTCGCCTGTATTGGGCCGTAGTGCTACATACTTGAAGGAATCACGCATCAATGCCTTGCCAAGGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAAAAGGCTAAGATTTTGCGGAAAGTAGATTATCCCCTGGAGTTGGATGTTTATGATTTTTGTTCAGATGATCTTCGTAAAAAATTGGATGCTCCTAGACAGATCCTAAGAAATGAGGAAGGCAAAAAGCTTGGTCTGAAAGTGAATGAGAAAAGCTCTGTTCAGAAGGAAAGTGATGTAAAAATGTCTGATGCTGAGGGATCATTGAATGGAGGGGAGCCATCTGTAGTTCCCATGGAGGAGGGTGAAAAGGAAACACAGATGACTGGAATTTATGATTTGGTTGCTGTATTAACCCACAAGGGCAGAAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGACGATGACAATCCCAAACCAAAACTAGAAGAAGACATAACTAGACTATCCGGAGGAGGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTGTAA 1611 0.4184 MSGPDTPLAHALSLGPNIKPQHTERRKGLNIFRFVLPFLQANLFTTLLCSFLPLTTTMITVSVRWQKEIFKDVELDTTQSAYVFKCQLYDLTGVPPERQKIMVKGGLLKDDADWSTVGVKEGQKLMMMGTADEVVKTPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALTNYSHSGRNNDVDQSSHLLTIATRDLFNELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSLGISENPDAVKALFGIELISRIHCQESNEESSETESVYSLKCHISQEVNHLHEGIKHGLKSELEKASPVLGRSATYLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQILRNEEGKKLGLKVNEKSSVQKESDVKMSDAEGSLNGGEPSVVPMEEGEKETQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPKLEEDITRLSGGGDWHMAYIIMYKARVVSV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01809 536 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 58 535 - -
Gma08g01809 536 Coils Coil 534 536 - -
Gma08g01809 536 ProSiteProfiles Ubiquitin domain profile. 59 128 IPR000626 GO:0005515
Gma08g01809 536 Gene3D - 57 130 - -
Gma08g01809 536 MobiDBLite consensus disorder prediction 423 438 - -
Gma08g01809 536 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 161 532 IPR028889 -
Gma08g01809 536 Pfam Ubiquitin family 59 130 IPR000626 GO:0005515
Gma08g01809 536 CDD Ubl_USP14_like 58 132 - -
Gma08g01809 536 Gene3D Cysteine proteinases 155 535 - -
Gma08g01809 536 SUPERFAMILY Ubiquitin-like 56 147 IPR029071 -
Gma08g01809 536 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 162 177 IPR018200 GO:0004843|GO:0006511
Gma08g01809 536 SMART ubq_7 59 130 IPR000626 GO:0005515
Gma08g01809 536 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 467 485 IPR018200 GO:0004843|GO:0006511
Gma08g01809 536 CDD Peptidase_C19A 162 530 - -
Gma08g01809 536 Pfam Ubiquitin carboxyl-terminal hydrolase 162 529 IPR001394 GO:0004843|GO:0016579
Gma08g01809 536 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 58 535 IPR044635 GO:0004843|GO:0016579|GO:0043161
Gma08g01809 536 ProSitePatterns Ubiquitin domain signature. 85 110 IPR019954 -
Gma08g01809 536 MobiDBLite consensus disorder prediction 423 451 - -
Gma08g01809 536 SUPERFAMILY Cysteine proteinases 159 530 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01809 Gma-Chr8 16115473 16128007 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01809 K11843 - gmx:100787481 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01809 08 16115473 16128007 Gma08g01809 08 16115473 16128007 ECH
Gma07g00114 07 975338 985243 Gma08g01809 08 16115473 16128007 GST