Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01801 ATGAACGGTGGTGATGAGGTCGTGGCAGCTCCGGCGAGTCCACCGCAGCCGCTGGAGTGGAAATTCTCGCAGGTTTTCGGGGAACGTACGGCGGGGGAGGAAGTTCAGGAAGTGGATATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTAGTTCTCTTTGAACGGACAGATACAAAAGATCATTGCGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGTTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGCCAAACAGCCAATGGTGCTTTGTTCCTTCTATCCACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGATCCTAAATTAATGGGAAATGGCTCTATTGCTAGTTCAAGTAATTCGGGTAGCTCTAAATCATATCTTGCAAATGGAGTATCTTCAGATGGACCATATAATTATTTAAACAACGATTTCTCATTTCCACCAGGCGGTGTACCTTCACTAAGATTACCATTGGTAGTTGTAACCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACCGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAAGAAGCCCCTGGGTCCAGATCATTTTTCACAGAGATTATCGCTTCAATCTCAGACATAAAATTTGGGAAGGATGGAAGATATATACTTAGTCGTGATTACATGACCTTAAAGTTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACGTTCCAGGTTCATGAGTATTTAAGGCCAAAGCTTTGTGATTTATATGAAAATGATTCAATTTTTGATAAGTTTGAGTGTTGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACTGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGCCAAGTTCCAACCCCTTCAAGACCATCTAGATCATTGGGAAACAGTATAACAAGAGTTGTAAGACGTGGAGCAGAGAGCGCGGGTGTTGACGCAAATGGGAACTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCAACTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCTTGA 1551 0.4043 MNGGDEVVAAPASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHCGSRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKFWKVQEKKVKKVSDMNVDPKLMGNGSIASSSNSGSSKSYLANGVSSDGPYNYLNNDFSFPPGGVPSLRLPLVVVTSHETSLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVSTGSYSNLFRVFGCVPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAESAGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01801 516 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Gma08g01801 516 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 516 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 SMART WD40_4 274 314 IPR001680 GO:0005515
Gma08g01801 516 SMART WD40_4 333 371 IPR001680 GO:0005515
Gma08g01801 516 SMART WD40_4 105 145 IPR001680 GO:0005515
Gma08g01801 516 SMART WD40_4 224 263 IPR001680 GO:0005515
Gma08g01801 516 SMART WD40_4 31 66 IPR001680 GO:0005515
Gma08g01801 516 PIRSF PPA2_B55 10 516 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 233 247 IPR018067 -
Gma08g01801 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 348 375 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 485 514 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 235 262 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 291 319 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 376 401 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 402 428 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 263 290 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 320 347 IPR000009 GO:0000159|GO:0019888
Gma08g01801 516 SUPERFAMILY WD40 repeat-like 39 507 IPR036322 GO:0005515
Gma08g01801 516 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 516 - -
Gma08g01801 516 Gene3D - 214 514 IPR015943 GO:0005515
Gma08g01801 516 Gene3D - 36 203 IPR015943 GO:0005515
Gma08g01801 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01801 Gma-Chr8 16052122 16058955 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01801 K04354 - gmx:100786941 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00110 07 944686 951507 Gma08g01801 08 16052122 16058955 ECH
Gma15g00214 15 1839428 1854520 Gma08g01801 08 16052122 16058955 ECH
Gma08g01801 08 16052122 16058955 Gma08g01801 08 16052122 16058955 ECH
Gma07g00110 07 944686 951507 Gma08g01801 08 16052122 16058955 GST
Gma15g00214 15 1839428 1854520 Gma08g01801 08 16052122 16058955 PCT
Gma08g01801 08 16052122 16058955 Gma15g00214 15 1839428 1854520 PCT