Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01793 ATGGCTCAGCCGCCGTTCGATCCGTTCTACCTTTACCAACATGATGAGCAGAGCAACATCAACACGCTATTTGTCTCCGGTCTACCAGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGCCCCGGCTTCGACTCCTGCCAACTCAAGTACACCGGCCGCGCCAACCAGGTCGTAGCGTTTGCCACGTTTTTCAACCACCAATCGGCAATGGCAGCGTTGCACGCCTTGAATGGTGTGAAATTTGATCCTCAAACTGGATCTGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGTAAACCAGGTAGTGGAGCCTACGTGGTTATAGATAAAAGGTCCAAAGGAGAGCCTGATCTTCAGGGATCATCAAGTGAGGACGGTGACAGCGACCCTGATGAACCATCAGACAGTGGCGACAACCAGGGTGATTTAGCAATCATGACAAGTGATGAAACGGCTGTTGGTTCTGACAATGCTGTATCTGTGGAGCAACATGGAAAGGGCAGTACTGGAGGACTGTGTTCCACTCTCTTTATCGCAAATCTTGGTCCAAATTGCACTGAAGATGAATTGAAGCAGGCTTTTTCTGCATATACTGGATTCAACATGGTCAAAATGCGTTCCAGAGGAGGAATGCCTGTTGCATTTGTTGATTTTGAGGAAACTCACCAAGCTGCTAAAGTCATGGAGGAGCTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGAATATGCAAGGTCTAAAATGAGGAAGCGTTAG 795 0.4906 MAQPPFDPFYLYQHDEQSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGSGAYVVIDKRSKGEPDLQGSSSEDGDSDPDEPSDSGDNQGDLAIMTSDETAVGSDNAVSVEQHGKGSTGGLCSTLFIANLGPNCTEDELKQAFSAYTGFNMVKMRSRGGMPVAFVDFEETHQAAKVMEELQGSLLPSSDRGGMHIEYARSKMRKR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01793 264 CDD RRM_scw1_like 181 258 - -
Gma08g01793 264 Gene3D - 15 103 IPR012677 -
Gma08g01793 264 MobiDBLite consensus disorder prediction 117 151 - -
Gma08g01793 264 SMART rrm1_1 22 93 IPR000504 GO:0003723
Gma08g01793 264 SMART rrm1_1 183 255 IPR000504 GO:0003723
Gma08g01793 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Gma08g01793 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 245 IPR000504 GO:0003723
Gma08g01793 264 CDD RRM_RBPMS_like 21 96 - -
Gma08g01793 264 MobiDBLite consensus disorder prediction 130 144 - -
Gma08g01793 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Gma08g01793 264 Gene3D - 180 264 IPR012677 -
Gma08g01793 264 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 141 262 - -
Gma08g01793 264 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 16 106 - -
Gma08g01793 264 PANTHER PROTEIN COUCH POTATO 141 262 - -
Gma08g01793 264 PANTHER PROTEIN COUCH POTATO 16 106 - -
Gma08g01793 264 SUPERFAMILY RNA-binding domain, RBD 20 243 IPR035979 GO:0003676
Gma08g01793 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01793 Gma-Chr8 15966812 15970559 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01793 - - gmx:100783764 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01793 08 15966812 15970559 Gma08g01793 08 15966812 15970559 ECH
Gma07g00103 07 862591 866888 Gma08g01793 08 15966812 15970559 GST