Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01201 ATGCGGATCCAGTGGTGGCTAAACACATGCTCCTCGGCCAACTGCGCCACCGCCACCCACCATTCAACAATCTCACTCCCCAAACAAAAAGAACATGCATGTGATGATTCCATCAGCTACTCCTCCATTTCCGAAGCACCTGCATCTTCCACAACCTCCAACAACAGCACTTCCTCTCTCGAAAGCAACCTCTCCATACAAACCCTCCCATCCGTTCCATCTCTCCAAAGCCTCTCTCCACAAAACTTCACCTTCTCCGTCTCCCACCATTGCGTCACCACCCTCGAGCCACACCTTTCTCGCCCCGTCACCTCCCTCGCTGTCAACAACAACCTCCTCTACGCCGCAACCGACCACGAAATCAACGTCTACGACCGCCACACCTGCACCACCATCCACGCCTTCAACACCCAGCCCACCTCCACCTCCAACTCCACCAAAACCATCGCCTTCTCCAACAACAACACCGTCATCACCACCCACCAAGACTGCAAGATCCGCGTGTGGCAAAACCACAAGAATATTCACCACCGCATGTTAGCCACTCTCCCCACCGTCAACGACCGTCTCCACCGTTTCCTCCTCCCGAAGAACTACGTCGCAATCCGTCGTCACGAGAAACGGCTCTGGATTGAGCATGCGGACGCCGTTACGGGACTCGCCGTTAGTAACGGTGCTATATACTCCGTTTCGTGGGACAGGACTCTCAAGATATGGCGGTTATCTGATTTTCGCTGCGTGGAGTCGTTGAAGGCGCACGAGGACGCGGTCAACGCGGTGGCAGTGTCCAACGATGGGACCGTCTACACAGGATCCGCGGACAAGCGCATACGCGTGTGGGCGAGGCCCGCGGGAGAGAAGCGGCACGTGCTGGTTGCCACGTTGGAGAAGCACAAGTCCGCGGTGAATGCTTTGGCGTTAAACGACGACGCTTCGGTGCTGTTTTCGGGTGCGTGTGACCGTTCAATATTGGTGTGGGAGAGGGAGGACAGTGCGAACCATATGGTGGTGAGTGGAGCTCTGAGGGGGCACCAGAAGGCGATACTGTGTTTGGTCAACGTCTCTGATTTGCTTTTCAGTGGATCCGCTGATCGTACGGTTAGGATTTGGAAGCGCGCTTATGATGGACGGTATGGATGCCTTGCTGTCCTCGACGGTCACCGGAAACCGGTTAAATCCTTGGCGGCGATTCCGGAGGAGTATGATCAAACTTCACCTAAATGTAGCGTCTCGGTTTTCAGTGGCTCTCTTGATGGAGAGATCAAGGTTTGGCAGGTTTCTATCACGAAGGCAGAACCCACTGTTTTCTTCGATGAAGGGATAAACCCTAGCGCCGCGAGGCCAAGGCAACACTCATCTGAATTTCTGAACTCTCAAAAATGGAAACGCCAACTGTAA 1398 0.5458 MRIQWWLNTCSSANCATATHHSTISLPKQKEHACDDSISYSSISEAPASSTTSNNSTSSLESNLSIQTLPSVPSLQSLSPQNFTFSVSHHCVTTLEPHLSRPVTSLAVNNNLLYAATDHEINVYDRHTCTTIHAFNTQPTSTSNSTKTIAFSNNNTVITTHQDCKIRVWQNHKNIHHRMLATLPTVNDRLHRFLLPKNYVAIRRHEKRLWIEHADAVTGLAVSNGAIYSVSWDRTLKIWRLSDFRCVESLKAHEDAVNAVAVSNDGTVYTGSADKRIRVWARPAGEKRHVLVATLEKHKSAVNALALNDDASVLFSGACDRSILVWEREDSANHMVVSGALRGHQKAILCLVNVSDLLFSGSADRTVRIWKRAYDGRYGCLAVLDGHRKPVKSLAAIPEEYDQTSPKCSVSVFSGSLDGEIKVWQVSITKAEPTVFFDEGINPSAARPRQHSSEFLNSQKWKRQL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01201 465 CDD WD40 91 425 - -
Gma08g01201 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 371 IPR001680 GO:0005515
Gma08g01201 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 280 - -
Gma08g01201 465 Gene3D - 292 462 IPR015943 GO:0005515
Gma08g01201 465 PANTHER F21J9.19 20 430 - -
Gma08g01201 465 MobiDBLite consensus disorder prediction 446 465 - -
Gma08g01201 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 327 - -
Gma08g01201 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 371 - -
Gma08g01201 465 SUPERFAMILY WD40 repeat-like 88 426 IPR036322 GO:0005515
Gma08g01201 465 Pfam WD domain, G-beta repeat 380 424 IPR001680 GO:0005515
Gma08g01201 465 Pfam WD domain, G-beta repeat 340 371 IPR001680 GO:0005515
Gma08g01201 465 Pfam WD domain, G-beta repeat 212 239 IPR001680 GO:0005515
Gma08g01201 465 Pfam WD domain, G-beta repeat 245 280 IPR001680 GO:0005515
Gma08g01201 465 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Gma08g01201 465 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Gma08g01201 465 PRINTS G protein beta WD-40 repeat signature 358 372 IPR020472 -
Gma08g01201 465 PRINTS G protein beta WD-40 repeat signature 227 241 IPR020472 -
Gma08g01201 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Gma08g01201 465 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 20 430 IPR045182 -
Gma08g01201 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 280 IPR001680 GO:0005515
Gma08g01201 465 MobiDBLite consensus disorder prediction 442 465 - -
Gma08g01201 465 Gene3D - 76 197 IPR015943 GO:0005515
Gma08g01201 465 Gene3D - 201 291 IPR015943 GO:0005515
Gma08g01201 465 SMART WD40_4 288 327 IPR001680 GO:0005515
Gma08g01201 465 SMART WD40_4 88 125 IPR001680 GO:0005515
Gma08g01201 465 SMART WD40_4 128 170 IPR001680 GO:0005515
Gma08g01201 465 SMART WD40_4 203 240 IPR001680 GO:0005515
Gma08g01201 465 SMART WD40_4 243 281 IPR001680 GO:0005515
Gma08g01201 465 SMART WD40_4 334 371 IPR001680 GO:0005515
Gma08g01201 465 SMART WD40_4 377 425 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01201 Gma-Chr8 10236359 10244157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01201 244 425 Acyl Lipid Metabolism Gene Families AT3G18860 27.128 1.17e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01201 - - gmx:100817776 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01201 08 10236359 10244157 Gma08g01201 08 10236359 10244157 ECH