Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma08g01197 | ATGGATGCCACTACAAGCGAAACCCCAACTATCCAATTCCATAACATCCCTGATCAGCCAATTACTACCATTGTTGCCACCCAATTGCCAACACTTCAAGGCCAGCAAGAGCAGCAACACCATTGCTTCGGGGACTCCAGTCCAGGAGAGTTTCCCTTGTCTGCTAATCCCTCCATCGTCCTTCATGTCCTTACAACATGTAACTTGTATCCTCAAGACCTTGCTAAACTTGAGGCAAGTGCTGCAACATGCTCCTTCTTCAAGCAGCCGGCAAACTTTGCTCCAGATTTTGACTTGTCCTTGTCAGAGCTTGCTGCATTGGACATGTGCCAGAAGAGAGCCATTTTTAAGCCAATGACAACAGAACAACGGCAACATTTGAAGCAAAGATGTGGTGGCTCTTGGAAATTGGTTCTGAGGTTTTTGCTTGCTGGAGAAGCATGTTGCAGAAGGAGGGAGAAATCGCAGGTAATAGCAGGTCCTGGTCATAGCATTGCCGTGACATCAAAAGGAGTTGTTTATTCATTTGGGTCCAATAGTTCAGGACAACTTGGGCATGGCACCACTGAAGATGTATGGCAACCTCGGCCAATCAGAGCTTTGCAAGGCATCCGAATTATACAAGCTACAGCTATGACTGGGAGGACAATGTTGATCAGTGATTCTGGGCAGGCTTATGTCTTTGGAAAAGAATCTTTTGGTGAAGTTGAGACGATTGTAAATCGAGGATCTAAAATTGTTACAACTCCACAGTTAGTTGAATCTTTGAAAAACATATTTGTTGTGCAAGCTGCAATGGGAAACTATTTCACGGCCGTATTGTCAAGAGAAGGCAGGGTTTATACATTTTCTTGGGGTTGTGTTGGCAAACTCTGTCACCAGACTGATCAAAATGATGTGGAACCCCGTCCTTTATTAGGAGCTCTGGAACACATACCAGTAGTGCAAATAGCTGCTGGATTCTGCTACCTGCTTTGTTTGGCTTGTCAACCAAGTGGAATGTCAGTGTACTCGGTTGGGTGTGGTTTGGGTGGGAAGCTTGGACATGGTACAAAAACGAATGAGGAGTATCCTCGTTTGATTGAACAATTCCAGCTGTTAAACCTTCAGCCCATGGCGATTGCTGCTGGTTCTTGGCATGCAGCTGTGGTTGGGCAGGATGGGCGTGTTTGCACATGGGGTTGGGGCAGTTATGGCTGCTTGGGTCATGGAAATGAAGAATGTGAATTAGTACCTAAGGTGGTGGAAGAGCTGAGAAATGTCAAAGCAGTTCATGTTGCTACAGGAGATTTCACTACTTTTGTAGTGTCTGATAGTGGTGATGTTTATTCATTTGGTTATGGAGAATCTGGTAGTCTTGGCCATGTCCCTGAAAATCATGAGCAGGAAGACATGCATGAAAATGTGTTAACTCCAAAGCTAGTCACTTGGATGAAACAGATCAATGAACGGGTGGTACAGATTAGCCTGACCAATTTCATATATTGGAATGCTCATACCTTTGCTCTAACTGAATCAGGGAAGCTGTATGCCTTTGGGGCTGGGGACAAAGGACAACTAGGTGTAGAGCTTGGTGCCCACCAGACTGAAAAAGGAAAGCCAGAGCGGGTTGATATTGATCTGGGTTAA | 1629 | 0.4524 | MDATTSETPTIQFHNIPDQPITTIVATQLPTLQGQQEQQHHCFGDSSPGEFPLSANPSIVLHVLTTCNLYPQDLAKLEASAATCSFFKQPANFAPDFDLSLSELAALDMCQKRAIFKPMTTEQRQHLKQRCGGSWKLVLRFLLAGEACCRRREKSQVIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEDVWQPRPIRALQGIRIIQATAMTGRTMLISDSGQAYVFGKESFGEVETIVNRGSKIVTTPQLVESLKNIFVVQAAMGNYFTAVLSREGRVYTFSWGCVGKLCHQTDQNDVEPRPLLGALEHIPVVQIAAGFCYLLCLACQPSGMSVYSVGCGLGGKLGHGTKTNEEYPRLIEQFQLLNLQPMAIAAGSWHAAVVGQDGRVCTWGWGSYGCLGHGNEECELVPKVVEELRNVKAVHVATGDFTTFVVSDSGDVYSFGYGESGSLGHVPENHEQEDMHENVLTPKLVTWMKQINERVVQISLTNFIYWNAHTFALTESGKLYAFGAGDKGQLGVELGAHQTEKGKPERVDIDLG | 542 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma08g01197 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 334 | 387 | IPR000408 | - | |
| Gma08g01197 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 440 | 506 | IPR000408 | - | |
| Gma08g01197 | 542 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 387 | 436 | IPR000408 | - | |
| Gma08g01197 | 542 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 336 | 384 | IPR000408 | - | |
| Gma08g01197 | 542 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 171 | 211 | IPR000408 | - | |
| Gma08g01197 | 542 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 439 | 489 | IPR000408 | - | |
| Gma08g01197 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 223 | 277 | IPR000408 | - | |
| Gma08g01197 | 542 | PRINTS | Chromosome condensation regulator RCC1 signature | 172 | 188 | IPR000408 | - | |
| Gma08g01197 | 542 | PRINTS | Chromosome condensation regulator RCC1 signature | 336 | 350 | IPR000408 | - | |
| Gma08g01197 | 542 | PRINTS | Chromosome condensation regulator RCC1 signature | 429 | 447 | IPR000408 | - | |
| Gma08g01197 | 542 | PRINTS | Chromosome condensation regulator RCC1 signature | 502 | 523 | IPR000408 | - | |
| Gma08g01197 | 542 | Gene3D | - | 329 | 541 | IPR009091 | - | |
| Gma08g01197 | 542 | Gene3D | - | 151 | 328 | IPR009091 | - | |
| Gma08g01197 | 542 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN | 1 | 541 | - | - | |
| Gma08g01197 | 542 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 374 | 384 | IPR000408 | - | |
| Gma08g01197 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 171 | 222 | IPR000408 | - | |
| Gma08g01197 | 542 | SUPERFAMILY | RCC1/BLIP-II | 155 | 456 | IPR009091 | - | |
| Gma08g01197 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 278 | 330 | IPR000408 | - | |
| Gma08g01197 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 388 | 439 | IPR000408 | - | |
| Gma08g01197 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 507 | 542 | IPR000408 | - | |
| Gma08g01197 | 542 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 1 | 541 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma08g01197 | Gma-Chr8 | 10218579 | 10221280 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma08g01197 | - | - | gsj:114421815 | 1077 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma08g01197 | 08 | 10218579 | 10221280 | Gma08g01197 | 08 | 10218579 | 10221280 | ECH |