Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01193 ATGCCAAGTATAGTTATTACATGCAGAAGTGTTGTTGATGGGTGCTACCTCACACTACTCATAATCTCATGCCTCGGTTTGATCGTCACACTCAACCGCTTCATCTCCTTCTTCACATGGATCTTCCGAACCTGTTTCCGATCCGAGAAGAATCTCCTCCGAAGCTACGGTTCGTGGGCTCTGGTCACCGGAGCCACCAACGGCATCGGAAAAGCCTTCGCTCACCAACTAGCGCAGAGAGGACTCAACCTTATTCTCGTGAGTAGAAGCTTCCAGAAGCTCAAAACCGTTGCCGGTGAAATAAAAGCAAAACACCCCGGCACGCGCGTGAAGATCGTTGAGATGGACTTCGCCGGCGACCTGACGGAGGGTCTCCGGCGCGTGGAGGAGGCGAGTGAGGGTTTGGATGTTGGCGTCTTGATCAACAACGTGGGGATAACGTATCCGAGGGCGATGTTCTTTCATGAGGTGGAGGAGAAAGTTTGGAGGAACATTGTTAGAGTGAACATCGAAGGAACCACGAGAGTAACGAAAATTGTTTTACGTGGGATGTTACAAAGGAGAAAGGGTGCGATTGTTAACATTGGATCCGGTGCTTCTGTGGTTGTGCCTTCTCATCCTCTCTTTACCATCTATGCTGCTTCAAAGGCTTACGTGGACCAGTTATCAAGATCTCTGTACGTGGAGTATGGACAATACGGGATTCATGTGCAATGTCAGGTACCACTATACGTTGCAACGAGTATGGTATCAAGGGTGGCATGTATTGAGAGAGATTCTTTGTTCATACCAACAGCTGAGGCTTATGCTAGAGCTGCAATTGGTGAAATTGGGTACAGACCAAAGTGCACACCTTATTGGGCTCACTCAATTCAGTGGTGTTTTGCAAACTTAATCCCTGATCCACTACTTGATGCTTGGCGCTTCTCCATTGGTATGCGCCGCAGGAATCAAAACGGAGAGTCAAGTCAAAATTAA 978 0.4826 MPSIVITCRSVVDGCYLTLLIISCLGLIVTLNRFISFFTWIFRTCFRSEKNLLRSYGSWALVTGATNGIGKAFAHQLAQRGLNLILVSRSFQKLKTVAGEIKAKHPGTRVKIVEMDFAGDLTEGLRRVEEASEGLDVGVLINNVGITYPRAMFFHEVEEKVWRNIVRVNIEGTTRVTKIVLRGMLQRRKGAIVNIGSGASVVVPSHPLFTIYAASKAYVDQLSRSLYVEYGQYGIHVQCQVPLYVATSMVSRVACIERDSLFIPTAEAYARAAIGEIGYRPKCTPYWAHSIQWCFANLIPDPLLDAWRFSIGMRRRNQNGESSQN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01193 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 57 272 IPR036291 -
Gma08g01193 325 PANTHER RH59310P 18 319 - -
Gma08g01193 325 PRINTS Glucose/ribitol dehydrogenase family signature 59 76 IPR002347 -
Gma08g01193 325 PRINTS Glucose/ribitol dehydrogenase family signature 135 146 IPR002347 -
Gma08g01193 325 PRINTS Glucose/ribitol dehydrogenase family signature 184 200 IPR002347 -
Gma08g01193 325 PRINTS Glucose/ribitol dehydrogenase family signature 212 231 IPR002347 -
Gma08g01193 325 PRINTS Glucose/ribitol dehydrogenase family signature 233 250 IPR002347 -
Gma08g01193 325 Gene3D - 51 278 - -
Gma08g01193 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 146 IPR002347 -
Gma08g01193 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 190 198 IPR002347 -
Gma08g01193 325 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 231 IPR002347 -
Gma08g01193 325 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 18 319 - -
Gma08g01193 325 PIRSF 11-beta-HSD1 8 321 - -
Gma08g01193 325 CDD 17beta-HSD1_like_SDR_c 57 300 - -
Gma08g01193 325 Pfam short chain dehydrogenase 59 252 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01193 Gma-Chr8 10194091 10197033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01193 34 317 Lipid Metabolism Gene Families AT1G24470 58.803 1.47e-123 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01193 K10251 - mnt:21410235 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01193 08 10194091 10197033 Gma08g01193 08 10194091 10197033 ECH
Gma08g01193 08 10194091 10197033 Gma18g00105 18 838777 841920 PCT
Gma08g01193 08 10194091 10197033 Gma11g02472 11 39992061 39994766 PCT