Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00948 ATGGGTTCTCTGGCCCGACCAAACTCACTCTTTTTTCGAACCAAAGGACCCGGACGTGCCCGGAAAGTACCAAGTCAGGTTTTGGCTTTTCAGCGTTCCAATTCAAATGGTTCATTTCCCTCATCAGAACAGCTAGAACTTGAAGCAAGCCAGAAGAACATGGAAGCACCTGTTGTTGTAGTCACTGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCCTTGGGTAAAGCCCCATGCAAGGTGTTGGTCAACTATGCCAGGTCATCCATGCAAGCTGAGGAGGTTTCCAACTTGATTGAGGCGTTTGGTGGACAAGCTCTTACCTTCGAGGGAGATGTTTCAAATGAGGCCGATGTGGAATCTATGATTAGAACTGCAGTTGATGCTTGGGGAACTGTTGATGTATTGGTAAACAATGCAGGAATTACTCGAGATGGTTTGTTAATGAGAATGAAGAAATCACAATGGCAGGAAGTTATTGATCTGAATCTCACTGGTGTTTTTCTTTGCATGCAGGCAGCAGCAAAGATTATGACGATGAAAAAGAAGGGAAGGATAATCAATATTACATCAGTTATTGGTCAGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAGGCAGGGGTAATTGGCCTCACAAAAAGTGCTGCCAGGGAATATGCTAGCAGAAACATCACTGTTAATGCAGTAGCCCCTGGGTTTATTGCATCTGATATGACTGCCAATCTACGACCAGGCATTGAGAAAAAAAGATTGGAATTAATCCCCTTAGGAAGACTTGGCCAACCAGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCTCTTAATCCTGCTGCCAATTACATCACTGGGCAGGTGTTCACCATTGATGGAGGTTTGGCAATGTGA 900 0.45 MGSLARPNSLFFRTKGPGRARKVPSQVLAFQRSNSNGSFPSSEQLELEASQKNMEAPVVVVTGASRGIGRAIALSLGKAPCKVLVNYARSSMQAEEVSNLIEAFGGQALTFEGDVSNEADVESMIRTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCMQAAAKIMTMKKKGRIINITSVIGQVGNVGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTANLRPGIEKKRLELIPLGRLGQPEEVAGLVEFLALNPAANYITGQVFTIDGGLAM 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00948 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 58 298 IPR036291 -
Gma08g00948 299 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 40 299 - -
Gma08g00948 299 CDD BKR_SDR_c 58 297 - -
Gma08g00948 299 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 193 221 IPR020904 GO:0016491
Gma08g00948 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 144 IPR002347 -
Gma08g00948 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Gma08g00948 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Gma08g00948 299 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 57 237 - -
Gma08g00948 299 Pfam Enoyl-(Acyl carrier protein) reductase 63 297 - -
Gma08g00948 299 Gene3D - 56 298 - -
Gma08g00948 299 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 40 299 - -
Gma08g00948 299 PRINTS Glucose/ribitol dehydrogenase family signature 58 75 IPR002347 -
Gma08g00948 299 PRINTS Glucose/ribitol dehydrogenase family signature 133 144 IPR002347 -
Gma08g00948 299 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Gma08g00948 299 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Gma08g00948 299 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Gma08g00948 299 PRINTS Glucose/ribitol dehydrogenase family signature 260 280 IPR002347 -
Gma08g00948 299 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 59 297 IPR011284 GO:0004316|GO:0006633|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00948 Gma-Chr8 7987120 7989765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00948 30 299 Acyl Lipid Metabolism Gene Families AT1G24360 68.519 3.73e-130 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00948 K00059 - gmx:100811718 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00086 18 685448 689538 Gma08g00948 08 7987120 7989765 PCT
Gma11g02494 11 40151386 40155618 Gma08g00948 08 7987120 7989765 PCT
Gma08g00948 08 7987120 7989765 Gma18g00086 18 685448 689538 PCT
Gma08g00948 08 7987120 7989765 Gma11g02494 11 40151386 40155618 PCT