Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00511 ATGGCTGATGCATTTGATGAAGAGTGTGATTATCTCTTCAAAGCTGTTTTGATCGGAGACTCCGGAGTTGGGAAATCAAATCTGCTCTCAAGGTTTGCAAAAGATGAATTCCGGTTGGATTCCAAACCCACCATTGGAGTTGAATTTGCTTACCGGAACATCAAGGTTGGAGACAAACTCATCAAAGCTCAAATATGGGACACTGCTGGCCAAGAAAGGTTTAGAGCAATCACAAGTTCATACTATAGAGGAGCCTTAGGGGCAATGCTAGTGTATGACATAAGCAGGAGATCAAGTTATGAGAATGTGAGCAAATGGCTACTGGAGCTGAGGGAGTTTGGAGGCGAGGACATGGTGGTTGTTCTGGTGGGAAACAAATGTGATCTGGATGGTCAATCAAGAGAAGTTGACAAAGAAGAAGGAAAAGGGTTTGCGGAAACAGAAGGATTATGCTTCATGGAAACCTCTGCTTTGAAGAATCTCAACGTTGAGGAAGTTTTCTTACAAATGATCACAAGGATTTATGACATGACAAGCCAGAAAAATTTGGCAGCTAAAATGGACGAGAAACCGATTAATCTTTTGAATGGGAAGGAGATCCATATAGCTGATGAAGTCACTGCAACTAAACAATCTAGTACTTGCTGTTCAAGATGA 657 0.417 MADAFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDISRRSSYENVSKWLLELREFGGEDMVVVLVGNKCDLDGQSREVDKEEGKGFAETEGLCFMETSALKNLNVEEVFLQMITRIYDMTSQKNLAAKMDEKPINLLNGKEIHIADEVTATKQSSTCCSR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00511 218 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
Gma08g00511 218 Gene3D - 5 216 IPR027417 -
Gma08g00511 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 191 IPR027417 -
Gma08g00511 218 PANTHER DRAB5-RELATED 1 217 - -
Gma08g00511 218 TIGRFAM small_GTP: small GTP-binding protein domain 12 167 IPR005225 GO:0005525
Gma08g00511 218 CDD Rab11_like 10 175 - -
Gma08g00511 218 PRINTS Transforming protein P21 ras signature 13 34 - -
Gma08g00511 218 PRINTS Transforming protein P21 ras signature 36 52 - -
Gma08g00511 218 PRINTS Transforming protein P21 ras signature 54 76 - -
Gma08g00511 218 PRINTS Transforming protein P21 ras signature 116 129 - -
Gma08g00511 218 PRINTS Transforming protein P21 ras signature 152 174 - -
Gma08g00511 218 SMART ran_sub_2 18 209 - -
Gma08g00511 218 ProSiteProfiles small GTPase Ras family profile. 7 218 IPR001806 GO:0003924|GO:0005525
Gma08g00511 218 ProSiteProfiles small GTPase Rab1 family profile. 8 216 - -
Gma08g00511 218 SMART ras_sub_4 10 177 - -
Gma08g00511 218 SMART rab_sub_5 13 177 - -
Gma08g00511 218 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Gma08g00511 218 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 217 - -
Gma08g00511 218 SMART rho_sub_3 15 177 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00511 Gma-Chr8 4214065 4217175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00511 14 180 EF-hand Containing Proteins AT5G27540 28.649 3.41e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00511 K07976 - gmx:100784107 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00511 08 4214065 4217175 Gma08g00511 08 4214065 4217175 ECH