Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00226 ATGGGGTGTTGTTGCACCAAACAGCGAGTCAATCAAAAAGATCCAGCAGTTCTTGCTTCCCAAACCTATTTTAATCTTTCTGAAATTGAAGCATTGTATGATCTGTTCAAGAAATTAAGCAGCTCCATCATCGACGACGGGGTTATCAGCAAAGAAGAGTTTCAGCTTGGCTTATTTGGAAGCAGCGAGAAACGGAGCCTCTTTGCCGACAGGGTCTTCGAATTATTTGACTCAAAAAATAATGGGGTGATAGAATTTGGAGAGTTCGTTCAAGCTCTGAGCGTCTTCCACCCAGCAGCGCCACAAACACAAAAAGCAGATTTTGCATTTCGACTCTATGATATATGTCAAAGAGGCTTTATTCAACGTCACGAGGTAAGAGAGATGATACTGGCACTACTAAATGAGTCGAATTTGGTTCTGTCTCATGAGATAATTGAGGTCATAATTGATAAGACCTTTGAAGAAGCAGACTCAAAAGGAGACGGAAGGATTGATCCAGAGGAGTGGCAAGAATTTGTAGCTCGAAATCCATCCTTATTATTGAGGAACATGACAATTCCCTATTTGAAGTAA 576 0.4097 MGCCCTKQRVNQKDPAVLASQTYFNLSEIEALYDLFKKLSSSIIDDGVISKEEFQLGLFGSSEKRSLFADRVFELFDSKNNGVIEFGEFVQALSVFHPAAPQTQKADFAFRLYDICQRGFIQRHEVREMILALLNESNLVLSHEIIEVIIDKTFEEADSKGDGRIDPEEWQEFVARNPSLLLRNMTIPYLK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00226 191 PRINTS Recoverin family signature 72 93 - -
Gma08g00226 191 PRINTS Recoverin family signature 119 137 - -
Gma08g00226 191 PRINTS Recoverin family signature 165 185 - -
Gma08g00226 191 CDD EFh 105 175 IPR002048 GO:0005509
Gma08g00226 191 Pfam EF hand 150 174 IPR002048 GO:0005509
Gma08g00226 191 PANTHER CALCINEURIN B-LIKE PROTEIN 5 1 191 - -
Gma08g00226 191 SMART efh_1 68 96 IPR002048 GO:0005509
Gma08g00226 191 SMART efh_1 149 177 IPR002048 GO:0005509
Gma08g00226 191 SMART efh_1 105 133 IPR002048 GO:0005509
Gma08g00226 191 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Gma08g00226 191 Gene3D - 14 191 - -
Gma08g00226 191 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Gma08g00226 191 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Gma08g00226 191 SUPERFAMILY EF-hand 16 181 IPR011992 -
Gma08g00226 191 PANTHER CALCINEURIN B 1 191 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00226 Gma-Chr8 1924447 1926325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00226 7 191 EF-hand Containing Proteins AT4G26570 61.905 1.44e-78 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00226 K06268 - gmx:100783417 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00226 08 1924447 1926325 Gma08g00226 08 1924447 1926325 ECH