Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00172 ATGGGGTTGATGGCTGCGAACCAAACTCAATTGTTGTCTAAGATGGCCATCGGAGATGGACATGGTGAAGCATCCCCATATTTTGATGGATGGAAGGCTTATGATGAAAACCCCTTTCATCCCAAAGAGAATCCTAACGGGGTTATTCAAATGGGTCTTGCTGAGAATCAGCTTACTTCTGATTTGGTTGAAGATTGGATACTGAATAACCCAGAGGCCTCCATTTGCACTCCAGAAGGAATAAATGATTTCAGGGCAATAGCTAACTTTCAGGATTATCATGGTCTACCCGAGTTCAGAAATGCTGTGGCTAAATTCATGGGTAGAACAAGAGGAAACAGAGTCACGTTTGATCCTGATCGTATTGTCATGAGCGGTGGAGCAACTGGAGCACACGAAGTCACTACCTTTTGTTTGGCAGACCCCGGTGACGCATTTTTGGTGCCAATTCCTTATTATCCAGGTTTTGACCGGGATTTGAGGTGGAGAACAGGAATTAAACTTGTTCCAGTTATGTGCGATAGCTCAAACAATTTCAAGTTGACAAAGCAAGCATTGGAAGATGCGTATGAGAAAGCCAAAGAGGATAACATTAGAGTAAAGGGCATGCTCATCACCAATCCTTCAAACCCATTAGGCACAGTCATGGACAGAAACACACTAAGAACCGTGGTGAGCTTCATCAATGAGAAGCGTATCCATCTTGTATCTGATGAAATATACTCTGCAACAGTTTTTAGCCGTCCCAGTTTCATAAGCATTGCTGAGATACTAGAGGAAGACACAGACATCGAATGTGACCGCAACCTCGTTCACATTGTTTATAGTCTTTCAAAGGATATGGGGTTCCCTGGCTTCAGAGTTGGCATCATATACTCTTACAATGATGCTGTGGTCAATTGTGCACGCAAAATGTCAAGCTTTGGGTTGGTGTCAACACAGACTCAGCATCTTTTAGCATCAATGCTAAATGATGATGAGTTTGTGGAAAGGTTTCTGGAAGAGAGTGCAAAAAGGTTGGCACAAAGGCATAGAGTTTTCACTTCGGGGTTGGCCAAAGTTGGCATAAAGTGCTTGCAAAGCAATGCTGGTCTCTTTGTGTGGATGGATTTAAGGCAACTTCTCAAGAAGCCAACGCTTGACTCTGAAATGGAGCTTTGGAGAGTGATCATTCATGAGGTTAAGATCAATGTTTCACCTGGCTCTTCTTTCCATTGCACTGAGCCAGGGTGGTTTAGGGTGTGCTATGCCAACATGGATGATATGGCTGTGCAAATTGCATTGCAAAGAATTCGAACCTTCGTGCTTCAAAACAAGGAGGTCATGGTTCCTAACAAGAAACATTGCTGGCACAGTAACTTGAGGTTGAGCCTCAAAACCAGAAGGTTTGATGATATCATGATGTCACCTCACTCCCCTATACCTCAGTCCCCTTTGGTTAAAGCCACAATTTGA 1455 0.4351 MGLMAANQTQLLSKMAIGDGHGEASPYFDGWKAYDENPFHPKENPNGVIQMGLAENQLTSDLVEDWILNNPEASICTPEGINDFRAIANFQDYHGLPEFRNAVAKFMGRTRGNRVTFDPDRIVMSGGATGAHEVTTFCLADPGDAFLVPIPYYPGFDRDLRWRTGIKLVPVMCDSSNNFKLTKQALEDAYEKAKEDNIRVKGMLITNPSNPLGTVMDRNTLRTVVSFINEKRIHLVSDEIYSATVFSRPSFISIAEILEEDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQHLLASMLNDDEFVERFLEESAKRLAQRHRVFTSGLAKVGIKCLQSNAGLFVWMDLRQLLKKPTLDSEMELWRVIIHEVKINVSPGSSFHCTEPGWFRVCYANMDDMAVQIALQRIRTFVLQNKEVMVPNKKHCWHSNLRLSLKTRRFDDIMMSPHSPIPQSPLVKATI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00172 484 CDD AAT_like 89 432 - -
Gma08g00172 484 Pfam Aminotransferase class I and II 49 431 IPR004839 GO:0009058|GO:0030170
Gma08g00172 484 Gene3D - 71 325 IPR015421 GO:0003824
Gma08g00172 484 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 1 446 - -
Gma08g00172 484 Coils Coil 176 196 - -
Gma08g00172 484 Gene3D Aspartate Aminotransferase, domain 1 37 430 IPR015422 GO:0003824
Gma08g00172 484 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 446 - -
Gma08g00172 484 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Gma08g00172 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Gma08g00172 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Gma08g00172 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Gma08g00172 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Gma08g00172 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Gma08g00172 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Gma08g00172 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Gma08g00172 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Gma08g00172 484 SUPERFAMILY PLP-dependent transferases 21 435 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00172 Gma-Chr8 1482292 1485155 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00172 K20772 - gmx:100037458 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00172 08 1482292 1485155 Gma08g00172 08 1482292 1485155 ECH
Gma05g02069 05 41941077 41943619 Gma08g00172 08 1482292 1485155 GST
Gma11g00196 11 1535661 1538173 Gma08g00172 08 1482292 1485155 PCT