Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00993 ATGTTCCTTTCAGTCAGATACTCCTTCACGCTCTTCTTCATTCTCCTCCTCTTATCACCTTCACACATTGCTTCAACAACACCAACACTAGCTCACACACTAACACAATCAGCCACCAAAATAGCCATCACAAACCGCAACATCCATAGCCTTAACAATGCTGGAAGAGGCACCAAAATCACCGGCATATCGCAATTCAAACGATACCTGCATCGTTTTGGGTACTTACAAAACAACAACATTAGTTTCAGTGATGAATTTGATGCCGTCTTGGAATCGGCTCTCTTTAGATACCAACGAAACCTTGGACTCCAAGTAACCGGGAAGCTCGATTCCAACACGGTTTCTCAAATGATCACACCAAGATGCGGTGATCCAGACACAAACACAACACCCCATCATCACAATCACGTTCACAAAACGCGCTTAACGAAGAATTTTGTGTTTTTCCCGGGAAAACCACGTTGGTCACGTTCCATGCCAATGACACTAACCTATGCCTTCTCCCGTGAGAACATGATCCATAGTTTGAGCATGAAGGAGATAAGAGAGGCATTCCAACGTGCATTCACAAGGTGGGCTTCGGTTATTCCGGTTAGTTTCGTTGAGGTGAGTGACTTTGAACTCACGGACATAAAAATAGGGTTTTACAATGGGGAGCATGGCGATGGTGAACCCTTTGATGGGGTGCTTGGAGTGTTGGCTCACTCCTTCTCGCCGGAGATCGGCCGGCTCCACCTCGACGCAGCCGAGACGTGGGCGGTGGACTTCCGGTCGACCACGTCAGAGGTGGCGGTGGACTTGGAGTCGGTGGCCACACATGAGATTGGACACTTGCTGGGGTTGTCTCATAGTTCGGTGAAAGAGGCTGTTATGTATCCAAGTTTGAGGCCTAGAGATAAGAGGGCTGATTTGAACATTGATGACATAAAAGGAGTGCAATCTCTATATGGGTCAAACCCTAATTTCAGATCCGAGTGGTCACTAGAGTCTGATATGTCCGCAAATCAAGGTTCTGCGTTTGTCGAACCTTTGAGTAGATCAGAATATTCAATGATGACGTTGGGTTGA 1071 0.4697 MFLSVRYSFTLFFILLLLSPSHIASTTPTLAHTLTQSATKIAITNRNIHSLNNAGRGTKITGISQFKRYLHRFGYLQNNNISFSDEFDAVLESALFRYQRNLGLQVTGKLDSNTVSQMITPRCGDPDTNTTPHHHNHVHKTRLTKNFVFFPGKPRWSRSMPMTLTYAFSRENMIHSLSMKEIREAFQRAFTRWASVIPVSFVEVSDFELTDIKIGFYNGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFRSTTSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANQGSAFVEPLSRSEYSMMTLG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00993 356 CDD ZnMc_MMP 155 318 IPR033739 GO:0008237|GO:0008270
Gma07g00993 356 SMART col_5 152 319 IPR006026 GO:0006508|GO:0008237|GO:0008270
Gma07g00993 356 PANTHER METALLOENDOPROTEINASE 4-MMP 12 347 - -
Gma07g00993 356 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 148 321 - -
Gma07g00993 356 Pfam Putative peptidoglycan binding domain 63 118 IPR002477 -
Gma07g00993 356 Pfam Matrixin 156 318 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Gma07g00993 356 SUPERFAMILY PGBD-like 56 128 IPR036365 -
Gma07g00993 356 Gene3D Collagenase (Catalytic Domain) 52 324 IPR024079 GO:0008237
Gma07g00993 356 PRINTS Matrixin signature 118 131 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma07g00993 356 PRINTS Matrixin signature 186 201 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma07g00993 356 PRINTS Matrixin signature 210 238 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma07g00993 356 PRINTS Matrixin signature 271 296 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma07g00993 356 PRINTS Matrixin signature 305 318 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma07g00993 356 PANTHER MATRIX METALLOPROTEINASE 12 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00993 Gma-Chr7 11196351 11197534 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00993 - K07999 gmx:100781237 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00993 07 11196351 11197534 Gma07g00993 07 11196351 11197534 ECH
Gma03g01109 03 36138102 36139205 Gma07g00993 07 11196351 11197534 GST