Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00533 ATGACATTTTGCATCTCCTTTCAGTACCATAGCTTCATGGATAACTTAGCAGCACCTTTCCATCATCTTAATTCTTATTTTGTTCATAACCCACAAGGCCACATGCCACCCAGAAGGCATTCACCCTCTTCAGTTTCTCTCGGAACGTCAGAAACTCAGATTGTTTCTTCTCCTCAATTTTCCTCACCAAAATTTTCTCCGTTCTTTCACCCTTTGGGTGGGATAAGGACTTTGAATTCCGTGAGGGAATTGCATGCCCAGATGATCAAAATGCCAAAAAAAGGGAACTTGGTTACAATGGATGGAAGCATGATGAGAAACTACTTGGAATTTGGAGACTTTGAGTCAGCTACAAAGGTATTCTTTGTGGGTTTTGCAAGGAATTACCTTCTGTGGAACTCTTTTCTTGAGGAGTTTGCAAGTTTTGGAGGTGACTCACATGAGATTCTGGAGGTCTTCAAGGAATTGCATGATAAAGGAGTGAAATTTGACAGTAAAGCTCTCACTGTTGTTCTGAAAATTTGTTTGGCTTTGATGGAGTTGTGGCTTGGGATGGAAGTTCATGCTTGTTTGCTTAAGAGAGGCTTCCAAGTTGATGTACACTTGAGTTGTGCATTGATCAATCTCTATGAGAAGTGCTTGGGAATAGATAGGGCAAATCAAGTTTTTGATGAGACCCCACTACAAGAAGATTTCTTATGGAATACAATTGTTATGGCAAACTTGAGGAGTGAGAGGTGGGAGGATGCCTTAGAACTGTCTCGTCGAATGCAATCAGCTTCTGCCAAAGCCACTGATGGCACCATTGTCAAGCTGCTGCAAGCATGTGGAAAATTGAGAGCTCTCAATGAAGGGAAGCAGATTCATGGGTATGTTATAAGATTTGGAAGAGTGTCAAATACTTCAATTTGCAACTCCATAGTTAGCATGTACTCTAGGAACAATAGACTTGAGCTAGCAAGAGCAGTTTTTGATTCAACTGAGGATCATAACTTGGCATCATGGAACTCAATAATTTCGAGTTATGCAGTCAATGGCTGTTTGAATGGTGCTTGGGATCTCTTCCGAGAAATGGAGTCTTCCAGCATCAAGCCAGACATTATAACTTGGAATTCTCTTTTGTCTGGCCATCTTCTTCAGGGGTCATATGAAAATGTTCTCACCAATATCCGGAGCCTGCAAAGCGCAGGCTTCAAgccagattcatcctgcagacttcacaaagacattaagatagcagagattgcagcaaggaatcttttcaggttggagccatataaTTCTGCTAACTATGTGTTGATGATGAACATATATTCCACTTTTGAGAGATGGGGGGACGTGGAGCGCCTTAAAGAGTCAATGACTGCCATGGGGGTGAAAATCCCAAATGTTTGGAGTTGGATACAAGTTAGGCAGACTATTCATGTGTTCTCCACAGAAGGGAAATCACATCCAGAAGAAGGAGAAATATATTTTGACTTGTATCAATTAATCTCTGAGATAAAAAAGCTGGGGTATGTACCTGATACTAATTGTGTGCATCAGAACATTGATGACAGTGAGAAGGAGAAGGTTCTGCTCAGTCACACAGAGAAGTTGGCTATGACGTATGGACTGATGAAAATTAAAGGAGGAACACCAATCAGGGTAGTGAAGAACACAAGAATTTGTCAAGACTGTCACACAGCAGCAAAGTACATCTCCTTGGCTCGAAACCGCGAGATTTTCCTCAGAGATGGTGGTCGTTTTCACCATTTCATGAATGGAGAATGCTCCTGTAATGATCGTTGGTAA 1794 0.3963 MTFCISFQYHSFMDNLAAPFHHLNSYFVHNPQGHMPPRRHSPSSVSLGTSETQIVSSPQFSSPKFSPFFHPLGGIRTLNSVRELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSSCRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKESMTAMGVKIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGECSCNDRW 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00533 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Gma07g00533 597 PANTHER OS05G0586900 PROTEIN 402 585 - -
Gma07g00533 597 PANTHER OS05G0586900 PROTEIN 228 402 - -
Gma07g00533 597 PANTHER OS05G0586900 PROTEIN 144 225 - -
Gma07g00533 597 PANTHER OS05G0586900 PROTEIN 68 175 - -
Gma07g00533 597 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 402 585 - -
Gma07g00533 597 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 228 402 - -
Gma07g00533 597 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 144 225 - -
Gma07g00533 597 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 68 175 - -
Gma07g00533 597 Pfam DYW family of nucleic acid deaminases 505 597 IPR032867 GO:0008270
Gma07g00533 597 Gene3D Tetratricopeptide repeat domain 140 283 IPR011990 GO:0005515
Gma07g00533 597 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Gma07g00533 597 Gene3D Tetratricopeptide repeat domain 284 417 IPR011990 GO:0005515
Gma07g00533 597 Pfam E motif 407 469 IPR046848 -
Gma07g00533 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Gma07g00533 597 Pfam PPR repeat 233 259 IPR002885 -
Gma07g00533 597 Pfam PPR repeat 303 326 IPR002885 -
Gma07g00533 597 Pfam PPR repeat family 331 376 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00533 Gma-Chr7 5146289 5149126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00533 60 597 Glycoside Hydrolase AT3G49170 27.334 9.70e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00533 - - gmx:100796795 803.512