LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma07g00108	ATGGAAGGTGGAAAAATTACTCAATCGGGTAATTACGACAATCTCCTGACATCTGGGACAGCCTTTGAAAAACTTGTGAGTGCTCATGAGGAAGCAATTACAGAGTTGGAACAAAGTAATGAAATCAAAACTCATACGGAAGAGTCTCAAGATTTTTATGTCGCTAAAAACGAAAGTGAGGAGGAGATTTCAACTGAGGGTCAACTTGAGGCACAGCTTACACAAGAAGAAGAAAAAGAGAAGGGTGATGTTGTCTGGAAGACATTCTGGGATTATATTTCGTTTTCCAAGGTTTCATTCATGCTGTGTTGGATCATATTGGCACAATCTGCTTTTGTTGCTTTGCAGACTGCATCAATGTTTTGGCTTGCTCTAGCCATTGAAGTTCCAAAATTAACTAGTGCCACCTTGATTGGAGTTGACTCATTAATTTCATTTGCTAGTGTTGCGTTTGCTTCAGCAGATTTGAGTATTTTGAACTTTGATATACCTTATTCCATCACCTTTGTAGTATCTGTAGCAATTGATATTGTGGTGACGATTTATATAATGGTTTTAGTAACATGGCCAGTACTCATTGTTGCCATTCCTGCAATGGTTGCATCAAAATATGTTCAGGGATATTATCAAGCCTCATCAAGGGAATTAATGCGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGTGTGGTTACTGTAAGAGCATTTAACATGGCAGAAAGATTTTTTAAGAACTACTTAAAGCTTGTGGACACAGACGCAACACTGTTCTTTCATTCTAATGTGGCCATGGAATGGTTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACGGTCATTACTTCAGCTTTGTTACTTATTCTAGTTCCTCAGGGATATGTGACCTCAGGATCTCAAATATTTTGGACTCGATGGTACTGCAACTTATTAAACTATATTATCTCTGTTGAAAGAATCAAGCAATTCATTCACCTTCCAGCAGAGCCTCCGGCCATCGTGCAGGACCACCGGCCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCATGCCTTAGAGATTAGATATCGTCCCAATGCTCCATTAGTGCTTAAGGGTATCACTTGTACGTTTAAAGAAGGTAGTAGAGTGGGAGTCGTAGGAAGGACAGGAAATGGAAAAAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAAAGGTTATATTCTTATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAGGGGCAGCATTAGAACCAACTCAGATGATGATATATGGAAGGCTTTAGAGAAATGTCAACTTAAGGATACTATCAGCCGCCTTCCAAAACTCTTGGATTCCTCCGGTGAGTAA	1443	0.3978	MEGGKITQSGNYDNLLTSGTAFEKLVSAHEEAITELEQSNEIKTHTEESQDFYVAKNESEEEISTEGQLEAQLTQEEEKEKGDVVWKTFWDYISFSKVSFMLCWIILAQSAFVALQTASMFWLALAIEVPKLTSATLIGVDSLISFASVAFASADLSILNFDIPYSITFVVSVAIDIVVTIYIMVLVTWPVLIVAIPAMVASKYVQGYYQASSRELMRINGTTKAPVMNFAAETSLGVVTVRAFNMAERFFKNYLKLVDTDATLFFHSNVAMEWLVLRIEALQNLTVITSALLLILVPQGYVTSGSQIFWTRWYCNLLNYIISVERIKQFIHLPAEPPAIVQDHRPPSSWPSKGRIDLHALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGNGKSTLISALFRLVEPAKGYILIDGINICSMGLKDLRMKLSIIPQEPTLFRGSIRTNSDDDIWKALEKCQLKDTISRLPKLLDSSGE	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma07g00108	480	Pfam	ABC transporter transmembrane region	153	303	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Gma07g00108	480	Gene3D	ABC transporter type 1, transmembrane domain	66	337	IPR036640	GO:0005524\|GO:0016021
	Gma07g00108	480	SUPERFAMILY	ABC transporter transmembrane region	149	338	IPR036640	GO:0005524\|GO:0016021
	Gma07g00108	480	PANTHER	NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED	151	478	-	-
	Gma07g00108	480	PANTHER	NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED	1	151	-	-
	Gma07g00108	480	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	346	476	IPR027417	-
	Gma07g00108	480	Pfam	ABC transporter	373	470	IPR003439	GO:0005524
	Gma07g00108	480	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	153	305	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Gma07g00108	480	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	151	478	-	-
	Gma07g00108	480	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	1	151	-	-
	Gma07g00108	480	Gene3D	-	339	480	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma07g00108	Gma-Chr7	900164	902262	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma07g00108	353	450	Calmodulin-binding Proteins	AT2G36910	34.000	1.10e-12	68.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma07g00108	-		-	gmx:100784827	785.408