Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02688 ATGCCCTACGCTCAACACATCTTCCACCAAATCGTGCTAAAGAACTCATTCCTCTGGAATTCCATGATCAGGGGCTACGCCTGCAACAACTCTCCATCCAAAGCCCTTATTTTATACCGCGAAATGCTGCATTTTGGACATAAGCCCGATAATTTCACCTACCCTTTTGTCCTCAAGGCATGTGGGGACCTTTTGCTTCGGGAAATTGGTAGAAAGGTTCATGCTTTGGTGGTGGTCGGTGGGTTGGAAGAGGATGTTTATGTGGGCAACTCGATACTCTCGATGTACTTCACGTTTGGTGACGTGGCAGCTGCGCGGGTGATGTTTGATAAAATGCCTGTGAGGGACTTGACTTCTTGGAACACTATGATGTCGGGGTTTGTGAAGAATGGGGAGGCAAGGGGTGCTTTTGAGGTTTTTGGGGATATGAGAAGGGATGGTTTTGTGGGAGATGGGATCACCTTGCTTGCACTTTTATCTGCCTGTGGGGATGTTATGGATTTGAAGGCGGGGAGAGAAATTCATGGTTATGTTGTTAGGAATGGTGGGAATAGGAGACTGTGTAATGGGTTTTTGATGAATTCAATTATTTGCATGTACTGCAATTGTGAGTCTATGTCCTTTGCAAGGAAGTTGTTTGAAGGGTTGAGAGTGAAGGATGTTGTGTCGTGGAATTCTTTGATTTCAGGGTATGAGAAGTGCGGGGATGCTTTTCTAGTTCTTGAGCTTTTCGGTCGAATGGTTGTAGTTGGTGCAGTGCCTGATGAGGTGACTGTGACTTCTGTGCTTGGGGCTTGTAATCAAATCTCGGCATTGCGATTGGGTGCCAGTGTGCAGTCATATGTTGTTAAGAGGGTGTTTGATGAGATGCCTGAGAAAATTTTGGCTGCTTGTACGGTTATGGTTACTGGATTTGGAATTCATGGGAGGGGGAGAGAGGCCATCTCCATTTTTTATGAAATGCTAGTGGATCTACTTGGCAGAGCAGGGTACTTAGCTGAAGCATATGGAGTTATAGAGAATATGAAATTGAAACCTAATGAGGATGTGTGGACTGCTCTTCTTTCTGCTTGCAGATTACATCGGAATGTCAAGTTAGCAGTGATCTCAGCGCAGAAGCTTTTTGAATTGAATCCAGATGGATCGGATGATATTTATGCCAAATTGAAAGACTTGAATGAGCAGCTGAAGAAAGCTGGATACAAGCCTGACACTAGTTTAGTTCTCTACGATGTTGAGGAAGAAATAAAGGAGAAGATGCTTTGGGATCATAGCGAGAGGTTGGCACTTGCTTTTGCTCTTATTAATACTGGTCCAGGGACAACAATCAGAATAACCAAGAATCTTTGTGTGTGTGGAGATTGCCACACGGATGTTTTGGAATTGCTACAATGCAGCATCACCGTTAGCATTGCAGATGCAACCGGACTATAA 1434 0.4442 MPYAQHIFHQIVLKNSFLWNSMIRGYACNNSPSKALILYREMLHFGHKPDNFTYPFVLKACGDLLLREIGRKVHALVVVGGLEEDVYVGNSILSMYFTFGDVAAARVMFDKMPVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDGITLLALLSACGDVMDLKAGREIHGYVVRNGGNRRLCNGFLMNSIICMYCNCESMSFARKLFEGLRVKDVVSWNSLISGYEKCGDAFLVLELFGRMVVVGAVPDEVTVTSVLGACNQISALRLGASVQSYVVKRVFDEMPEKILAACTVMVTGFGIHGRGREAISIFYEMLVDLLGRAGYLAEAYGVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLCVCGDCHTDVLELLQCSITVSIADATGL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02688 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Gma06g02688 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Gma06g02688 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 49 IPR002885 -
Gma06g02688 477 PANTHER - 382 461 - -
Gma06g02688 477 PANTHER - 1 283 - -
Gma06g02688 477 TIGRFAM PPR: pentatricopeptide repeat domain 18 50 IPR002885 -
Gma06g02688 477 TIGRFAM PPR: pentatricopeptide repeat domain 222 256 IPR002885 -
Gma06g02688 477 TIGRFAM PPR: pentatricopeptide repeat domain 119 151 IPR002885 -
Gma06g02688 477 Pfam DYW family of nucleic acid deaminases 400 459 IPR032867 GO:0008270
Gma06g02688 477 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 283 - -
Gma06g02688 477 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 319 381 - -
Gma06g02688 477 PANTHER - 284 321 - -
Gma06g02688 477 Pfam PPR repeat family 14 61 IPR002885 -
Gma06g02688 477 Pfam PPR repeat family 219 266 IPR002885 -
Gma06g02688 477 Gene3D Tetratricopeptide repeat domain 277 427 IPR011990 GO:0005515
Gma06g02688 477 Pfam PPR repeat 298 322 IPR002885 -
Gma06g02688 477 Pfam PPR repeat 119 148 IPR002885 -
Gma06g02688 477 Gene3D Tetratricopeptide repeat domain 65 186 IPR011990 GO:0005515
Gma06g02688 477 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 382 461 - -
Gma06g02688 477 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 284 321 - -
Gma06g02688 477 Gene3D Tetratricopeptide repeat domain 187 274 IPR011990 GO:0005515
Gma06g02688 477 Gene3D Tetratricopeptide repeat domain 1 64 IPR011990 GO:0005515
Gma06g02688 477 PANTHER - 319 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02688 Gma-Chr6 50533615 50535653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02688 5 457 Glycoside Hydrolase AT3G49170 29.537 1.56e-65 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02688 - - gmx:113001901 579.711