Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02476 ATGCGCGCCCCCACCGCAAGAAACCTATGTACCCTCAGCAACCTATTCCGCTCGAAGTTGTTAACCCGCAAACGCAACACCAACGTTGTCCCCTTCACAAAACCTTCTCCTGAATCCGAAGACGAAATGTACCTCTCCTCAGAACCTTACCTCGCTCGTGACACTTCCCAAGGTGGAATTGAAATGTGCCCTCTTGGCTTATATTGTCTTATCAATGTTGGGTATGTGCTGTTTTTTCTTTTGGCAGCTAAAGAGGACAAGAGGTGTGCTTTAGAGGAAATTGATGATGATGAAGAAAAGAGGAAACAAACTGTAGATATACCGTGGATACTGGACCTGTCTCATGGTAAGTTGTCGGAGAAACGGAAGGATGTAGCGCGTGAGAGGAAACAAAAGTGGATTTTTAAATACACGAGTGATGACCGTTTCGACAGGTTAATTAAAATGTGTGCAGATAAACTAGGAGTGGGAAAGACCGTTAATGTGTTTGGTCAATTGGGTCGAGAAACAGGTGTGAAAGAGTATAACACATTGATAAAAATGTGCGTAAAGAAGGCTAGGGCAACTGACGATGAATTCATTGGTGTAAGAGAAATGAGTAAGGCTTTTCACCTTTACAAATCAATGAGAGATCTTGGGTATCCACTAGAAGAGAAAACATATGGTCCACTTCTTCGGTATTTAGTTGATATGGGTTTGGTTCAAGAATTTCAACTTTTCACTGATATTATCAAAACAGAGAACCCTAGTTCAGCTTCACGATTGGGTTACTATGAAATGTTGCTGTGGTTGAGAGTTGGCAATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTCGAAGCTAGAGAAGAGACTTCTGCTTTACGAGAAAGTTACTTGATGGCTCTTTGTGAAAGTGATAGGAAAATGCAGATTTTGGATGTGGTGAAGAATATAGACGTCACAAAGCTTTCATCTGCAAAATCTATTGCTGATATATTCCAATCATTAGGCAGGCTCCATCTGGAATCTATTGCAGACGATTTACTTTTGGATTTGAGAGCATGTGATCATGATGCAGATAATATTTCAAACTTCATTGTTAGTTATGCTGTTAGCATCCCAAATTTAGCGGTAGAAGATATTATTCCAAAATTCAAGAATATGCATGAATTACTGGAAGTGTTGCCTTCAACCTCATCATATGAAAAGCTCATTTTGCATTGCTGTGGATTAGACAAGGTGGGCATAGCTCTTGATATTGTTGAAAAAATGTGTGAAGCTGGCTTTACCTTGTCAACTGAGGTGTTACAATGCATATTACAAATCTGTGAGGAATCTTATGAATATATTCTGGTCCATCGAATCTATTCCATAATATGTCGCTATCATTTGGAGTTGAACGGTGAAATATGCAGGCGTTTGGTACACTTTTTCGTCAGGATGAAAGATTTTGAAGGGGCATACAGGATGATTGCTGACTTAGAGGATATGAATTTCAAGCCTACAACAAACATGTACAATGCTATAATGGCAGGATATTTTCGAGAGAAGAACATCAGAGGAGGGTTGAGGGTCCTCAATCAAATGCGAGGTGCCAATGTAAAACCTGATTCTCATACTTTCTACTATTTGATTCAGAATTGTGAAACGGAAGAGGATATAATCAAGTATTGTGAAGAAATGAAGCAATCTGGAGTCCATGCTACAAAACAAATTTTTATGGCACTTATTAATTCATATGCAGCTTCTGGAAAATTGGAGAAGGCAAAACAGGTAGTTTTAGATTCAAACATACCAAACAAGAGCTTAAATGAAATCAAGAGTGTACTTGTGTCAGCTCTTGCATCACATGGGCAATTGTCCGAGGCTCTTCTTGTATATGAGGAGATCAAGAAAGCTGGACATAATTTGGAGCCAAAAGCTGTTATAACTCTGATTGAGGAGTTCACTAAATTCAATGGGGAGTTGGATGGATTGCTGCTTCTACTTGAGGAAATGAATGATGTAGACTATTGGGTTGATGGTTGCTTCAAGGTTATCATGTACTGTATACGGAACAAGAATTTGAGTTCTACTATTCTTTTGTTCAAACAACTTAAGGACAAGTTCAAAAATGATGACCTAGTAATGGAAGCTCTTTTTGATGCAGTATTTTCTCTGATTGCATCGTCTGAGTCCTCTCATTTACAGATTGGCCTGGACTTGCTTTGGGCAATCAAGGATGAGCTTGGCCTTATGCCTTCGCGGCAGTGTCTTGATTTTCTTCTAAGTGCTTGTGCGAATGCTGGAGATTTGAACAATGCTCGCTTGATTTGGAGAGAGTACGAAGTTGCTGGATTTCCTTACAATGTATTAAGTTACTTGAGGATGTATCAGGCACTTTTGGCTGCAGGAGATGATAGATCTGCTCACTTTATGCTTAAGAAAATTCCACAAGATGATGCCGAGATTGTAGTCTATGCAGACGTGCAGTTTGAACTGCATCTAAGAAAGCTTGGACTTGGTGATCCTCCCAAGGGAACCATGCATTTCATTTCTAGCTTGACAACCTTTTCAATATGA 2550 0.3945 MRAPTARNLCTLSNLFRSKLLTRKRNTNVVPFTKPSPESEDEMYLSSEPYLARDTSQGGIEMCPLGLYCLINVGYVLFFLLAAKEDKRCALEEIDDDEEKRKQTVDIPWILDLSHGKLSEKRKDVARERKQKWIFKYTSDDRFDRLIKMCADKLGVGKTVNVFGQLGRETGVKEYNTLIKMCVKKARATDDEFIGVREMSKAFHLYKSMRDLGYPLEEKTYGPLLRYLVDMGLVQEFQLFTDIIKTENPSSASRLGYYEMLLWLRVGNEEMIRDICEYITVEAREETSALRESYLMALCESDRKMQILDVVKNIDVTKLSSAKSIADIFQSLGRLHLESIADDLLLDLRACDHDADNISNFIVSYAVSIPNLAVEDIIPKFKNMHELLEVLPSTSSYEKLILHCCGLDKVGIALDIVEKMCEAGFTLSTEVLQCILQICEESYEYILVHRIYSIICRYHLELNGEICRRLVHFFVRMKDFEGAYRMIADLEDMNFKPTTNMYNAIMAGYFREKNIRGGLRVLNQMRGANVKPDSHTFYYLIQNCETEEDIIKYCEEMKQSGVHATKQIFMALINSYAASGKLEKAKQVVLDSNIPNKSLNEIKSVLVSALASHGQLSEALLVYEEIKKAGHNLEPKAVITLIEEFTKFNGELDGLLLLLEEMNDVDYWVDGCFKVIMYCIRNKNLSSTILLFKQLKDKFKNDDLVMEALFDAVFSLIASSESSHLQIGLDLLWAIKDELGLMPSRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLAAGDDRSAHFMLKKIPQDDAEIVVYADVQFELHLRKLGLGDPPKGTMHFISSLTTFSI 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02476 849 PANTHER OS02G0132600 PROTEIN 7 816 - -
Gma06g02476 849 Pfam PPR repeat 605 630 IPR002885 -
Gma06g02476 849 Pfam PPR repeat 569 588 IPR002885 -
Gma06g02476 849 Gene3D Tetratricopeptide repeat domain 138 339 IPR011990 GO:0005515
Gma06g02476 849 Gene3D Tetratricopeptide repeat domain 675 819 IPR011990 GO:0005515
Gma06g02476 849 Gene3D Tetratricopeptide repeat domain 397 674 IPR011990 GO:0005515
Gma06g02476 849 Coils Coil 80 100 - -
Gma06g02476 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Gma06g02476 849 TIGRFAM PPR: pentatricopeptide repeat domain 501 534 IPR002885 -
Gma06g02476 849 Pfam PPR repeat family 497 544 IPR002885 -
Gma06g02476 849 PANTHER OS02G0132600 PROTEIN 7 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02476 Gma-Chr6 47205949 47249957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02476 390 791 Glycosyltransferase AT1G05670 19.912 5.47e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02476 - - gmx:100787964 1533.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02476 06 47205949 47249957 Gma06g02476 06 47205949 47249957 ECH