Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02224 ATGACTCCACCCGTCGAACCACAACATTTCAAGAGTAAAGTGTTTTTCGACCCTAATGTCATTGAAATTACACCTCCAACTCTATATAATAACCCTCCTAATTCTACTAAGCAGAAAGAGGCCATTTTGAATCCTGAGGTTATCAATGTCGAAAGCGATGATAATTCTACTGAGTTAATATTATTTGGGCAAAGAGTTAGAAAGGGGAAGGAAATTCAGACCACCCATCAAAACATGGAAGTGTGTGAGGATGTAATGGGTAAATCTTTATGGACTGACAAGCATAGTTCTAGTTCTGACAGCTCAAACCACAAGGATGATGTTGAATACTATGATTTTTTTTCAAAAGATCATACGATGACAACATCTCAACCTTCGTTGTCACTGGAGCCTTCTGGAGTACAATACTCTCAAACTCCCCTGAGTAAGAAGAAATCAAATGACTCACAACAAAGGAAGCAGAAGTTAAAGTTGCCATTGGAAATTGGGTCATCTACATCTTTTGAGAGTAAAAAGAAGCCAAACATTTGTTATTCTTCTAACCATGAATTTGCAAACAATTTTGAGGCTAAGAAATCAGTGACTgcaggtggggcaccacattcgggacttctccctacaggtggggcatcagattggggactgttgccagcaggtggagcaccacaggcagtaggtgggacactacacttgggactgctacctgcaggtgggatgttgcctgcagctggagcaccacaggcagcaggtgggacactacattggggactgctacctgcaggtgggatgccgccggccggtgggacaccagattgggggatgttgcctgcagctggagcaccacaggcagcaggtgggaccctacattggggactgctacctgcaggtgggatgccgccggcaggtgccacaccggactggggactgttgtccactggtggaacaccacaggtggtcagtgggacaccacactggggactgccacctgcaggtggaatatcgcctgcaagtgggacaccagattggggactgctgtctgcaggtgggacaccacaggcggtaggtgggacaacatattgggggctgccgcctgcaggtggCGCACCAGAATGGGGACTGCCGTCCACAGTTCCAATGATGACACTTTACAGTCCATATCATTCAAATTTTGTTGGACCTTCATATCATCATCCAGGAGCTGAATCTATTAATCAGATGTGGTCGACGAATGCTCATCACTTGCAGGCGATCCCTAATTATAATTATCCTCATCCTTATAGTTATACCTATGATTATAATTATACAGCTCCCGTTGTTCACCATTACCATGTCCCTCCTGCGCCATTGTTTCATAACTCTTTGGTTCAAAATTCTGTGGGAGATGAAAATAATGGAGCAACTACCAATAGTACTGTTGCTACAATTTCAGATGAAGCTAGAGAGGAAATTCTGGTGAAATTTCGAAACTTTAAACAATTTGACGTTGTTGAAGACGTTTCAGACCATCACTTTGTTAATGCCGACTCTTCCATGCAACAGCATTCAAAGAATTGGGCTAAAAGAATCCAGGGAGAGTGGAAGTCATTGGAGAAGGATTTACCAGATTCAATATTTGTCAGAGTTTATGAATCAAGAATAGATCTTCTGAGGGCCGTGATTATTGCAGCAGAGGGAACACCTTATCATGATGGCCTTTTCTTTTTTGATGTTTACTTCCCAAGTGGCTATCCCCATGTACCGCCGaacgtccactaccattccggagggcttaggctcaacccaaatttatataattgtggcaaagtttgtcttagtctacttaacacctggactggccatcagaatgagcagtggatttcaggtgtttcaacaattctacaggttctggtctctatacagggtctaatcttggttgcaaagcctttctttaatgagcctggatatgCACATTTGAACGGTTCACAATATGGTGAAATTAGTTCTTTGCGGTACAATGAGGACTCATTCATCCTATCATTGAGGACAATGATGTATATCATGAAAAGGCCTCCAAAGAATTTCGAGGACTTTGTTGTTGGGCACTTCTGCCGCCGAGCTCATGATATTCTTGAGACATGCAAAGCATACATTGATGGGGCTCAAGTTGGTTGTGTGGTCAAAGGAGGGGCACAAGATGTTGATCAGGGTGACAACAGTAGTTCAATCCAGTTTAGGACTTCTTTGGCTGCAGTTGTGCATATGCTTATTAAAGAGTTTACACAAATTGGAGCCAAGGATTGTGACCAAGTCTTTCCATCAacagcagcaggaaatccgtctgTTGCCACCAGCAAAATTAAATTCTTTGATGTTCCTGTGAGAATGCTTACATGGGAATACGGAGGGAGTGATTAG 2394 0.274 MTPPVEPQHFKSKVFFDPNVIEITPPTLYNNPPNSTKQKEAILNPEVINVESDDNSTELILFGQRVRKGKEIQTTHQNMEVCEDVMGKSLWTDKHSSSSDSSNHKDDVEYYDFFSKDHTMTTSQPSLSLEPSGVQYSQTPLSKKKSNDSQQRKQKLKLPLEIGSSTSFESKKKPNICYSSNHEFANNFEAKKSVTAGGAPHSGLLPTGGASDWGLLPAGGAPQAVGGTLHLGLLPAGGMLPAAGAPQAAGGTLHWGLLPAGGMPPAGGTPDWGMLPAAGAPQAAGGTLHWGLLPAGGMPPAGATPDWGLLSTGGTPQVVSGTPHWGLPPAGGISPASGTPDWGLLSAGGTPQAVGGTTYWGLPPAGGAPEWGLPSTVPMMTLYSPYHSNFVGPSYHHPGAESINQMWSTNAHHLQAIPNYNYPHPYSYTYDYNYTAPVVHHYHVPPAPLFHNSLVQNSVGDENNGATTNSTVATISDEAREEILVKFRNFKQFDVVEDVSDHHFVNADSSMQQHSKNWAKRIQGEWKSLEKDLPDSIFVRVYESRIDLLRAVIIAAEGTPYHDGLFFFDVYFPSGYPHVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWTGHQNEQWISGVSTILQVLVSIQGLILVAKPFFNEPGYAHLNGSQYGEISSLRYNEDSFILSLRTMMYIMKRPPKNFEDFVVGHFCRRAHDILETCKAYIDGAQVGCVVKGGAQDVDQGDNSSSIQFRTSLAAVVHMLIKEFTQIGAKDCDQVFPSTAAGNPSVATSKIKFFDVPVRMLTWEYGGSD 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02224 797 SMART ubc_7 520 677 - -
Gma06g02224 797 MobiDBLite consensus disorder prediction 121 157 - -
Gma06g02224 797 Gene3D Ubiquitin Conjugating Enzyme 476 757 IPR016135 -
Gma06g02224 797 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 517 677 IPR000608 -
Gma06g02224 797 MobiDBLite consensus disorder prediction 121 145 - -
Gma06g02224 797 Pfam Ubiquitin-conjugating enzyme 521 647 IPR000608 -
Gma06g02224 797 CDD UBCc 520 646 IPR000608 -
Gma06g02224 797 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 35 767 - -
Gma06g02224 797 SUPERFAMILY UBC-like 503 684 IPR016135 -
Gma06g02224 797 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 35 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02224 Gma-Chr6 40744646 40751143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02224 465 762 Miscellaneous Gene Families AT2G33770 46.179 8.89e-82 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02224 K10581 - gmx:100791144 1459.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02224 06 40744646 40751143 Gma06g02224 06 40744646 40751143 ECH