Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02135 ATGGCGAACCCAATCGACGGTGGCGAGTTCGAGTGCCTTTCCGGGTTCGGCAACCACTTCTCCTCCGAGGCCCTCGCCGGAGCTCTGCCGGCGGCGCAGAACAGCCCCCTCGTCTGCCCGTACGGACTATACGCCGAGCAAATCTCCGGCACCTCCTTCACTTCTCCTCGCAACCGCAACCTCTTCAGTTGGTTTTATCGGATCAAACCATCAGTGACTCACGAACCGTTCAAGCCAAGAGTACCGGGTAATGGGAGGATTTTGAGTGAGTTCAACAACTCCAGCAGTTCTGCTAACCCAACTCAGCTTAGATGGAAGCCCATGGATGCACCCGATTCGCCAATGGATTTCATTGATGGGTTGTCCACCATGTGTGGTTCTGGCAGCTCCTTCATGCGCCACGGATATGCTATTCACATGTACAATGCCAACAAATCAATGGACAATTGTGCCTTTTGCAATGCTGATGGTGACTTCTTGATAGTTCCCCAACAAGGAAGACTCCTTATCACTACTGAATGTGGAAGATTGAAAGTTTCTCCGGGTGAAATTGCTATAATACCTCACGGTTTTCGTTTTTCTGTGAATCTGCCTGATGGTCCATCCCGCGGTTATGTTGCTGAAATTTTTGGTACTCATTTTCAACTTCCTGATCTGGGACCAATAGGTGCTAATGGTCTTGCTTCCCCAAGGGATTTCCTTGTTCCTAGTGCTTGGTTTGAAGATAAATCTTATCCTGGGTACACCATAGTGCAGAAGTTTGGTGGTGAACTCTTTGATGCAGTACAAGATTTCTCTCCCTTCAATGTTGTTGCTTGGCATGGTAATTATGTTCCATATAAGTATGATTTAAGCAAATTCTGCCCTTATAATACAGTTCTGTTTGATCATAGTGATCCATCAATCAATACTGTGTTGACCGCACCAACTGATAAACCTGGAGTGGCATTGCTTGATTTTGTCATTTTTCCACCCAGATGGCTGGTTGCTGAGCATACTTTCCGGCCTCCATATTATCATCGCAATTGCATGAGTGAATTTATGGGCCTTATTCATGGTGGCTATGAGGCCAAGGCTGATGGATTTCTTCCCGGTGGTGCAAGTCTCCATAATTGTATGACTCCCCATGGTCCTGATACAAAGTCATATGAGGCTACCATTGCACGAGGAAATGATGGAGGACCTTATACACTGGTGATTGGTGGGTCAAACGGCAGGCTACAAGATGAAGAAAGTTAG 1239 0.4689 MANPIDGGEFECLSGFGNHFSSEALAGALPAAQNSPLVCPYGLYAEQISGTSFTSPRNRNLFSWFYRIKPSVTHEPFKPRVPGNGRILSEFNNSSSSANPTQLRWKPMDAPDSPMDFIDGLSTMCGSGSSFMRHGYAIHMYNANKSMDNCAFCNADGDFLIVPQQGRLLITTECGRLKVSPGEIAIIPHGFRFSVNLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLASPRDFLVPSAWFEDKSYPGYTIVQKFGGELFDAVQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEAKADGFLPGGASLHNCMTPHGPDTKSYEATIARGNDGGPYTLVIGGSNGRLQDEES 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02135 412 TIGRFAM hmgA: homogentisate 1,2-dioxygenase 11 386 IPR005708 GO:0004411|GO:0006559|GO:0006570
Gma06g02135 412 SUPERFAMILY RmlC-like cupins 11 388 IPR011051 -
Gma06g02135 412 Pfam Homogentisate 1,2-dioxygenase C-terminal 285 388 IPR046451 -
Gma06g02135 412 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 9 389 - -
Gma06g02135 412 Gene3D Jelly Rolls 273 399 IPR014710 -
Gma06g02135 412 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 9 389 IPR005708 GO:0004411|GO:0006559|GO:0006570
Gma06g02135 412 CDD cupin_HGO_N 103 211 - -
Gma06g02135 412 Pfam Homogentisate 1,2-dioxygenase N-terminal 13 284 IPR046452 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02135 Gma-Chr6 37841699 37877448 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02135 K00451 - gmx:100779961 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02135 06 37841699 37877448 Gma06g02135 06 37841699 37877448 ECH