Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01809 ATGCTTCACGACTATGATACTCCTTTCATAGCCCTCTCTCTCGCGCCTCTCCTTCTCTCTCTGTTGGCAATCTCAGTGACAATGGGGAGTGACGACAATCTAAAGACATGGGTATCAGATAAGTTGATGTCTCTACTGGGATATTCTCAGCCCACAGTTGTCCAGTACATGATTGGACTATCCAAGCAAGCTACTTCTCCAGCTGATTTGGTGGGCAAACTAGTGGAGTTTGGGATCTCGTCAATGGACACTCATGCATTTGCGGAAGAAATTTACTCAAGAGTTCCTCGTAGATCATCTGGTATAAATCAATATCAGAAACAAGAGAGAGAAGCTGCAATGTTGGCGAGGAAGCAGAAGACTTACTCAATTTTGAAGGCTGATGACGATATTGACGATGACTATGTAGATAAATCTTCAGTAACTACTGCATCATCTAGAAGCTCTGACAAGCATAAAAAACGTTTCAGGAAGAAAACTGAAGTTCAAGATGATCAAGATGATGAGGCAATAAAGGAAAAGGAGAGACAAGTTAAGAGAAGAACTTCCCCTGATGAAGATAGTGATTCTGAGTCCGAAGAAGAAAGATTGAAAGATCAAAGAGAGAAGGAGGAATTAGAGCAGCATATGCGAGAAAGAGATGCAGCAGGGACACGGAAGttgactgaacaaaaattaacacgaaaggaggaagAAGAGGCAATTCGAAGATCTAAAGCTGCAGAGCAGGATGATATTCAATCTTTGAGAAAGGTTTCAAGGCAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTAGAAGAACTGAGAGATGATATAGAAGATGAGCAATATCTATTTGAAGGTGTGAAGCTTTCAGAAGCAGAATATCGCGAACTGAGGTACAAGAAAGAGATATATGAACTTGTGAAAAAGCGGTCAGAGGAGGCTGACAATGCGAATGAGTATAGAATGCCAGAAGCTTATGATCAGGAAGGTGGTGTTAATCAGGAGAAGAGATTTTCTGTGGCTATGCAGCGTTACAGGGATCTAAATGCTGAGGATAAGATGAATCCATTTGCTGAACAAGAGGCTTGGGAAGAACACCAAATTGGAAAGGCAACACTGAAGTTTGGTTCAAAAAATAAAAAACAAGTCTCTGATGATTATCAGTATGTGTTTGAGGACCAGATTGATTTTATCAAGGCATCAGTAATGGAGGGAGATAAGTTTGATTATGAAGAGATGGAAGATTCACATGAAAAATCCAAAGCGAAGTCAGCTTTCGAGGCACTTCAGGAGGAGAGGAAAAAGTTACCTATGTTCCCTTATCGGGATGAATTGCTCGAAGCTGTTCATAATCACCAGGTACTTGTTATTGTTGGAGAAACTGGTTCCGGAAAGACAACACAGATCCCCCAATATCTTCATGAAGCTGGCTACACAAAGCGTGGAATGATTGCATGTACTCAGCCACGACGTGTTGCGGCTATGAGTGTTGCTGCTCGAGTTTCTCAAGAAATGGGTGTTAAATTAGGACATGAGGTTGGTTACTCCATCCGTTTTGAAGATTGTACATCAGAGAAGACTATTCTGAAATACATGACTGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCGGATTTGGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCATGAAAGAACACTCTCAACTGATATTCTGTTTGGATTAGTGAAGGATATTGCTCGTTTCCGGCCTGATCTCAAGCTGCTGATATCAAGTGCTACACTTGATGCAGAGAAATTCAGTGATTACTTCGATTCTGCGCCAATATTCAGAATTCCAGGGAGACGATATCCTGTTGAAATAAGCTATACCAAAGCTCCAGAAGCTGACTACTTAGATGCAGCTATTGTCACATCACTTCAAATCCATGTCACTCAACCTCCTGGAGATATATTGGTATTCCTTACTGGTCAAGAAGAAATTGAAACGGCAGAAGAAATCTTGAAGCATCGAACTAGAGGCTTGGGGACTAAAATTTCTGAGTTAATAATATGCCCTATATATGCCAACCTTCCAACTGAACTACAAGCTAAAATATTTGAACCCACTCCCGAAGGGGCACGAAAGGTTGTCCTTGCTACTAATATTGCAGAAACGTCATTGACAATTGATGGGATCAAGTATGTTATTGATCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAGTCTTTGCTAGTAACTCCCATCTCAAAAGCTTCAGCAAATCAAAGAGCTGGTCGTTCTGGAAGAACGGGTCCTGGAAAGTGCTTCCGACTGTATACTGCATACAATTATCACAATGATTTGGATGATAACACTGTACCAGAAATACAGCGGACTAACCTTGCAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGACTTATTGAACTTTGATTTTATGGATCCTCCACCTGCTGAGGCCTTATTGAAAGCTTTGGAGCTTCTATTTGCATTAAGTGCGTTAAATAAGCTTGGTGAATTAACTAAGGTGGGTAGACGGATGGCAGAGTTCCCACTTGATCCAATGTTGTCAAAAATGATAGTGGCTTCAGAAAATTACAAGTGTTCAGATGATATCATTTCTATTGCTGCTATGCTTTCGGTTGGAAACTCAATATTTTACCGTCCAAAAGATAAACAAGTACATGCAGACAATGCAAGGCTGAATTTTCACACTGGAAATGTGGGAGACCATATGGCGCTGCTAAAGGTCTACAATTCATGGAAGGAAACCAATTATTCAACGCAATGGTGTTATGAGAATTATATACAGGTAAGGAGTATGAAACGGGCTAGGGATATTCGTGATCAACTGGCAGGTCTTTTAGAGAGGGTTGAGATTGAACTAACTTCAAATGCTAATGATTTAGATGCCATCAAGAAATCCATTACATCTGGTAAACTTATAAGACTAATAATTTCTTGCAATGCAGATTTTTTTAGTGTACTGAATCTAATTTTAACTGTTGCAGGGTTTTTCCCACACTCTGCACGGCTGCAAAAGAATGGATCATATCGAACTGTTAAACATTCACAGACTGTTCACATACATCCTAGTTCGGGGCTGGCTCAGGTTCTTCCCAGATGGGTTGTATACCATGAACTAGTACTCACAACCAAGGAATATATGAGACAGGTGACGGAGTTGAAGCCAGAGTGGTTGGTGGAGATAGCCCCCCACTATTACCAGCTTAAGGATGTTGAAGACTCATATTCGAAGAAAATGCCTCGTGGAGCAGGACTTCCATCGTAG 3291 0.4023 MLHDYDTPFIALSLAPLLLSLLAISVTMGSDDNLKTWVSDKLMSLLGYSQPTVVQYMIGLSKQATSPADLVGKLVEFGISSMDTHAFAEEIYSRVPRRSSGINQYQKQEREAAMLARKQKTYSILKADDDIDDDYVDKSSVTTASSRSSDKHKKRFRKKTEVQDDQDDEAIKEKERQVKRRTSPDEDSDSESEEERLKDQREKEELEQHMRERDAAGTRKLTEQKLTRKEEEEAIRRSKAAEQDDIQSLRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLSEAEYRELRYKKEIYELVKKRSEEADNANEYRMPEAYDQEGGVNQEKRFSVAMQRYRDLNAEDKMNPFAEQEAWEEHQIGKATLKFGSKNKKQVSDDYQYVFEDQIDFIKASVMEGDKFDYEEMEDSHEKSKAKSAFEALQEERKKLPMFPYRDELLEAVHNHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGMIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFRIPGRRYPVEISYTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKISELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAYNYHNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASENYKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHMALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTSNANDLDAIKKSITSGKLIRLIISCNADFFSVLNLILTVAGFFPHSARLQKNGSYRTVKHSQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDVEDSYSKKMPRGAGLPS 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01809 1096 PANTHER ATP-DEPENDENT RNA HELICASE 131 979 - -
Gma06g01809 1096 PANTHER ATP-DEPENDENT RNA HELICASE 1002 1090 - -
Gma06g01809 1096 MobiDBLite consensus disorder prediction 310 329 - -
Gma06g01809 1096 PANTHER OS05G0389800 PROTEIN 131 979 - -
Gma06g01809 1096 PANTHER OS05G0389800 PROTEIN 1002 1090 - -
Gma06g01809 1096 CDD SF2_C_RHA 609 770 - -
Gma06g01809 1096 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 628 803 IPR001650 -
Gma06g01809 1096 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1002 1074 IPR011709 -
Gma06g01809 1096 SMART ultradead3 430 614 IPR014001 -
Gma06g01809 1096 Gene3D - 807 966 - -
Gma06g01809 1096 SMART ha2_5 823 915 IPR007502 GO:0004386
Gma06g01809 1096 MobiDBLite consensus disorder prediction 194 254 - -
Gma06g01809 1096 SMART helicmild6 654 762 IPR001650 -
Gma06g01809 1096 MobiDBLite consensus disorder prediction 139 254 - -
Gma06g01809 1096 MobiDBLite consensus disorder prediction 157 187 - -
Gma06g01809 1096 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 547 556 IPR002464 -
Gma06g01809 1096 Pfam Helicase associated domain (HA2) 824 898 IPR007502 GO:0004386
Gma06g01809 1096 Pfam Helicase conserved C-terminal domain 635 762 IPR001650 -
Gma06g01809 1096 Coils Coil 941 961 - -
Gma06g01809 1096 Gene3D - 387 607 IPR027417 -
Gma06g01809 1096 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 442 605 IPR014001 -
Gma06g01809 1096 Coils Coil 252 279 - -
Gma06g01809 1096 Gene3D - 608 783 IPR027417 -
Gma06g01809 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 957 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01809 Gma-Chr6 18839818 18878738 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01809 K12813 - gmx:100809559 1957.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01809 06 18839818 18878738 Gma06g01809 06 18839818 18878738 ECH