Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01692 ATGCAGAATATGTTAAGAGCAAAGGCGATAAGTAGTACCCTCTCAAGCAATGCTAGGAGTATTTTGCTTAGTGGTTCGCGATGTAATGCAGCAGATGGAAATTCATGCAATTGCCCCGAGGATGAAACATGTGTGTCGAAGAGACAGCAGAGGAAAAACAATGAAGATTTACTTGCGCCAAAGCCACCCTCCTTGGTGTCCAAAGCCACGTCTCAAGTTGTAGGAACACTGGTTTCGGGAAACTTGGCTAATGGGCCTGCTTCCCACAACGTTGGGAGTGTTGGTCAATCTGGTTGTGTACAAAAAGTCCGGCCTCCTTCGTATGCACCGAGTAAATCGGAGTCTGTTACATCTGCTTGTGTTGTTGATGGTGTTCAGGAGCATGTTGCTCACTCGTCTTCTCTTAATGCTGACCAGTTTTATAGGGCCGGTATTGCAGCTGTTAATTTTATTTCTGATGTAGTTAATTATAAGTTGCCTTTATCAGATGGCATGGGAATACTAAACTACTCTAAAAATTGTATGGTTGATCCTGCCAGAGCCCTACCCAAGATCAGATCCTCCAATGTGCAGCAAATTAGAACGGAGAACTTTACCTCTGTTCATCCCAAACCACCTGTTCCTGCTCATCCGGGGCCATCAAAACATACAAATAATAATCACGGTGCCAAGGGAAAAGCTAACAAATCAAATTTAGCTAAAGGCTTTAAGTACGTTGCTGCTTCAGGGACAGAGAAGTCAGGGGCAGCTCCAAATATTCCTGTAAATAACCATGATCGCAGAGCCTTGCCACAGAGAACAAGAACCAATTCAAACCACTTTGTGACAAATTTTGGTTCCAACATGCAAAGTTCAAATCCACAGATGGCGCGGCCATTCAAAGAAAGTTTCAATAAACACACAAGGGATCTGAATATGCCAGCAGGAATTGCTCCGACGCGGAGGCATTTTACTAATTCAGGGCATGTTGTGGAAGGGGTTAAAGATATACTGAAACAGTTAAGGTGGGGTCCTGCTACGGAGAAGGCTCTTTATAACCTGAATTTTTCAATTGACGCATATCAAGCTAATCAGATCCTAAAGCAACTTCAAGACCATTCAGTTGCTCTAAGCTTCTTTTACTGGCTAAAGCGTCAACCAGGCTTCTGGCACGATGGGCATACTTACACCACCATGGTTGGTATCCTGGGCCGTGCAAGGGAGTTTGGTGCTATAAACAAATTGCTAGAGCAGATGGTCAAGGATGGATGCCAGCCTAATGTTGTTACTTACAACCGTCTAATTCACAGCTATGGCCGTGCAAACTACCTAGGGGAGGCACTGAATGTGTTCCACCAAATGCAGGAGATGGGATGCAAGCCTGATCGTGTTACTTACTGCACGCTCATTGATATCCATGCAAAAGCTGGATTTCTTGATGTGGCTATGTCTATGTATGAAAGAATGCAAGAAGTTGGCCTTTCTCCTGACACATTTACATACAGTGTCATGATCAACTGTCTTGGGAAATCTGGTAATTTATCTGCTGCCCATAGGCTATTTTGCGAGATGGTTGATCAGGGTTGTGTTCCCAATATCGTCACATACAATATCTTGATTGCTTTGCAAGCTAAAGCAAGGAACTACCAGACAGCATTGAAACTGTACCGTGACATGCAGAATGCAGGATTTAAACCTGACAAAGTTACTTATAGCATTGTAATGGAGGTTCTTGGCTACTGTGGCTATCTTGAGGAAGCAGAAGCAGTGTTTTTTGAGATGAAACAGAACGACTGGGTTCCAGATGAACCCGTTTACGGTCTTCTGATTGACCTGTGGGGAAAGGCTGGTAATGTGGAGAAGGCTTGGGAATGGTATCATGCAATGCTGAGAGCTGGTTTGCTTCCTAATGTGCCGACTTGCAATTCACTTCTCAGTGCATTCCTCAGGGTGCATCGATTGCCAGATGCGTATAATCTTCTCCAAAACATGGTGACTCTTGGCTTAAACCCCTCTTTGCAGACTTACACTTTGCTTCTCAGTTGTTGTACGGAGGCACAATCACCGTATGATATGGGATTTTGTTGTGAGCTTATGGCAGTCTCTGGCCATCCTGCACATGCTTTTTTACAGTCCATGCCAGCAGCAGGACCTGATGGTCAAAATGTGCGGGATCATGTAAGCAAATTCTTAGACCTTATGCATTCCGAGGATAGAGAGGGCAAAAGAGGGCTTGTAGATGCAGTGGTGGATTTTCTTCACAAATCTGGACTCAAGGAGGAGGCCGGTTCGGTTTGGGAGGTGGCTGCACAAAAAAATGTGTATCCTGATGCCATCAGGGAGAAAAGCACTTGTTATTGGCTTATAAATCTTCATGTCATGTCTGATGGAACTGCTGTAACAGCATTGTCTAGGACACTTGCTTGGTTTCGAAGACAGATGCTGACATCTGGGGTTGGCCCTAACCGGATAGATATCATCACTGGATGGGGTCGTAGGAGTAGGGTGACAGGTTCTTCTCTTGTGAGACAGGCAGTGCAAGAACTGCTGCATGTATTTAGTTTCCCATTTTTCACTGAAAATGGCAATTCAGGTTGTTTTGTGGGATGTGGGGAGCCTCTTAGTCAATGGTTGGTCCACTCTTATGTGGAAAGAATGCATTTACTATAG 2649 0.4455 MQNMLRAKAISSTLSSNARSILLSGSRCNAADGNSCNCPEDETCVSKRQQRKNNEDLLAPKPPSLVSKATSQVVGTLVSGNLANGPASHNVGSVGQSGCVQKVRPPSYAPSKSESVTSACVVDGVQEHVAHSSSLNADQFYRAGIAAVNFISDVVNYKLPLSDGMGILNYSKNCMVDPARALPKIRSSNVQQIRTENFTSVHPKPPVPAHPGPSKHTNNNHGAKGKANKSNLAKGFKYVAASGTEKSGAAPNIPVNNHDRRALPQRTRTNSNHFVTNFGSNMQSSNPQMARPFKESFNKHTRDLNMPAGIAPTRRHFTNSGHVVEGVKDILKQLRWGPATEKALYNLNFSIDAYQANQILKQLQDHSVALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVFHQMQEMGCKPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNDWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQSPYDMGFCCELMAVSGHPAHAFLQSMPAAGPDGQNVRDHVSKFLDLMHSEDREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAIREKSTCYWLINLHVMSDGTAVTALSRTLAWFRRQMLTSGVGPNRIDIITGWGRRSRVTGSSLVRQAVQELLHVFSFPFFTENGNSGCFVGCGEPLSQWLVHSYVERMHLL 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01692 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Gma06g01692 882 Gene3D Tetratricopeptide repeat domain 475 621 IPR011990 GO:0005515
Gma06g01692 882 Gene3D Tetratricopeptide repeat domain 622 685 IPR011990 GO:0005515
Gma06g01692 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Gma06g01692 882 Pfam PPR repeat 388 417 IPR002885 -
Gma06g01692 882 Pfam PPR repeat 598 627 IPR002885 -
Gma06g01692 882 Gene3D Tetratricopeptide repeat domain 340 473 IPR011990 GO:0005515
Gma06g01692 882 Pfam PPR repeat 486 518 IPR002885 -
Gma06g01692 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Gma06g01692 882 PANTHER BNAA07G31720D PROTEIN 4 882 - -
Gma06g01692 882 SUPERFAMILY HCP-like 431 626 - -
Gma06g01692 882 Gene3D - 759 861 IPR036063 -
Gma06g01692 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Gma06g01692 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Gma06g01692 882 TIGRFAM PPR: pentatricopeptide repeat domain 457 491 IPR002885 -
Gma06g01692 882 TIGRFAM PPR: pentatricopeptide repeat domain 422 455 IPR002885 -
Gma06g01692 882 TIGRFAM PPR: pentatricopeptide repeat domain 387 421 IPR002885 -
Gma06g01692 882 TIGRFAM PPR: pentatricopeptide repeat domain 492 526 IPR002885 -
Gma06g01692 882 TIGRFAM PPR: pentatricopeptide repeat domain 527 560 IPR002885 -
Gma06g01692 882 TIGRFAM PPR: pentatricopeptide repeat domain 562 596 IPR002885 -
Gma06g01692 882 TIGRFAM PPR: pentatricopeptide repeat domain 598 631 IPR002885 -
Gma06g01692 882 MobiDBLite consensus disorder prediction 197 229 - -
Gma06g01692 882 SMART SMR_2 779 871 IPR002625 -
Gma06g01692 882 Pfam PPR repeat family 629 676 IPR002885 -
Gma06g01692 882 Pfam PPR repeat family 524 569 IPR002885 -
Gma06g01692 882 Pfam PPR repeat family 419 465 IPR002885 -
Gma06g01692 882 PANTHER OS03G0856100 PROTEIN 4 882 - -
Gma06g01692 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Gma06g01692 882 SUPERFAMILY SMR domain-like 780 860 IPR036063 -
Gma06g01692 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Gma06g01692 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Gma06g01692 882 ProSiteProfiles Smr domain profile. 782 863 IPR002625 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01692 Gma-Chr6 16973366 16976697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01692 381 712 Miscellaneous Gene Families AT4G11690 26.126 8.29e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01692 - - gmx:100781029 1778.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01692 06 16973366 16976697 Gma06g01692 06 16973366 16976697 ECH