Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01090 ATGAGTTTTAACCTTGGCACATGGAGAAACAACCCATCACATTGGTTTTGTTCCATAAGGAACCACATTCAGCAAGGATCATTGAGATGTGCTCTTCTTGCGTATAAACAAACCCGGCATGAAGGAGTATATGATTCCAGCGTTGCCCCTCTGTTATTCAAGGCTTGCGCTTCTCTTCCATTCCTTCATTACGTGAAGGCCTTGCATGCAGAGTCCATCAAGGCCGGTTCAGAGAGCGACGTGATCATCGGAACCGCATTGCTCACAACTTACTCCAAATGCGGTGTCGTTAGGGATGCGCGTAATCTGTTTGACACAATGCCTGAGAGAAATGTTGTGACTTGGAATGCCATGATCAGTGGGTACTTGAGAAATGGAGACACGGAATCTGCTTATCTTGTGTTTGAGAAGATGCAGGGGAAAACGCAAGTGACTTGGAGTCAGATGATTGGTGGGTTTGCTAGGAATGGTGATATTGCCACTGCTAGGAGGTTGTTTGATGAGGTTCCCCATGAGTTGAAGAATGTGGTGACATGGACTGTGATGGTTGATGGGTATGCTAGAATAGGGGAGATGGAAGCTGCCAGGGAGGTCTTTGAGATGATGCCTGAAAGGAATTGCTTTGTGTGGTCATCTATGATTCATGGGTACTTCAAGAAGGGCAATGTCACTGAGGCTGCGGCTGTTTTTGACTGGGTTCCGGTTCGGAATTTGGAGATTTGGAATTCCATGATTGCTGGCTATGTTCAGAATGGATTTGGTGAGAAAGCACTGCTAGCTTttgagggaatgggagctgaaggatttgagccggatgagttcactgttgttagtgttttatctgcttgtgctcagctggggcacctggatgttgTTAAGTACCATGATAAGCCTTTTCTGAGACCAGTGGCAATGCCCTGA 921 0.4159 MSFNLGTWRNNPSHWFCSIRNHIQQGSLRCALLAYKQTRHEGVYDSSVAPLLFKACASLPFLHYVKALHAESIKAGSESDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHELKNVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVVKYHDKPFLRPVAMP 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01090 306 Gene3D Tetratricopeptide repeat domain 14 141 IPR011990 GO:0005515
Gma06g01090 306 TIGRFAM PPR: pentatricopeptide repeat domain 113 139 IPR002885 -
Gma06g01090 306 TIGRFAM PPR: pentatricopeptide repeat domain 240 273 IPR002885 -
Gma06g01090 306 TIGRFAM PPR: pentatricopeptide repeat domain 209 231 IPR002885 -
Gma06g01090 306 TIGRFAM PPR: pentatricopeptide repeat domain 144 168 IPR002885 -
Gma06g01090 306 TIGRFAM PPR: pentatricopeptide repeat domain 177 207 IPR002885 -
Gma06g01090 306 Gene3D Tetratricopeptide repeat domain 207 296 IPR011990 GO:0005515
Gma06g01090 306 Gene3D Tetratricopeptide repeat domain 142 206 IPR011990 GO:0005515
Gma06g01090 306 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Gma06g01090 306 PANTHER OS01G0913400 PROTEIN-RELATED 11 293 - -
Gma06g01090 306 SUPERFAMILY TPR-like 8 223 IPR011990 GO:0005515
Gma06g01090 306 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 172 IPR002885 -
Gma06g01090 306 Pfam PPR repeat 209 231 IPR002885 -
Gma06g01090 306 Pfam PPR repeat 144 168 IPR002885 -
Gma06g01090 306 Pfam PPR repeat 177 207 IPR002885 -
Gma06g01090 306 PANTHER BNACNNG13520D PROTEIN 11 293 - -
Gma06g01090 306 Pfam PPR repeat family 110 140 IPR002885 -
Gma06g01090 306 Pfam PPR repeat family 238 284 IPR002885 -
Gma06g01090 306 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 141 IPR002885 -
Gma06g01090 306 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01090 Gma-Chr6 10264227 10266228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01090 19 293 Glycoside Hydrolase AT3G49170 28.819 3.37e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01090 - - gmx:100802813 600.127