Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01045 ATGCACAGCGCAAGCGAGGCGATGATTCAGGATGTTGGAGAAGCAAGTGAAAGAGTGTGCAAGGTTATGATGACGTGTCCTACCCTCGGACTTGACACTGCTCTTAATCAAACCGGTGTTAGAGTTTCCCCTGATTTAGTTGAGAACGTTCTCAAGAGGTTCGAGAATGCGGGCATGCCAGCATTTCGGTTCTTTGAGTGGGCAGAGAAGCAGAGAGGTTACTCACATAGCATTAGGGCATACCACTTGATGATTGAATCTTTGGCCAAGATTAGACAGTACCAGATCGTGTGGGACCTTGTTAGTGCAATGAGGAAAAAGGGTATGCTAAATGTTGAAACTTTTTGCATCATGATGAGAAAGTATGCTAGGGCTAACAAGGTTGATGAGGCTGTTTACACCTTTAATGTTATGGATAAGTATGACGTGGTTCCGAATCTTGCTGCATTTAATGGTTTGCTGAGTGCTTTGTGCAAGTCCAACAATGTAAGGAAGGCTCAGGAGATTTTTGATGCTATGAAGGGTCAGTTTGTGCCGGACGAAAAAAGTTACAGCATTTTGCTTGAGGGGTGGGGAAAGGCTCCCAATCTTCCCCGGGCTAGGGAGGTTTTTAGAGAGATGGTTGAGGCGGGGTGCGACCCTGATGTCGTTACTTATGGTATCATGGTTGATGTTCTTTGCAAAGCGGGGAGGGTTGATGAAGCTGTTGAGGTTGTGAAGGAAATGGATGTGGGCAATTGCAGGCCAACGTCGTTCATTTATAGTGTCTTGGTTCATACTTATGGAGTGGAGCACCGGATTGAAGATGCTATTGATACGTTCCTTGAGATGGCGAAGAAGGGAATCAAGGCTGATGTTGTGGCATATAATGCCTTGATTGGTGCATTTTGTAAAGTAAATAAGTTTAAAAATGTGCATAGGGTCTTGAAGGAGATGGAGAGCAATGGTGTCGCTCCTAATTCAAGGACCTGCAATGTTATTATAAGCAGTATGATTGGCCAAGGACAGACTGATAGAGCTTTCCGAGTCTTCTGCCGGATGATCAAGTTGTGTGAACCGGATGCTGACACATATACAATGATGATTAAAATGTTCTGTGAGAAAAATGAACTGGAGATGGCTCTGAAAATATGGAAGTATATGAAATCAAAACAGTTTGTTCCAAGCATGCACACCTTTTCTGCCCTTATCAAGGGGTTGTGTGAAAAGGACAATGCTGCAAAGGCTTGTGTTGTGATGGAAGAGATGATAGAGAAGGGAATTCGACCATCACGTATTACATTTGGGAGGTTAAGACAGTTGCTTATAAAGGAAGGGAGAGAGGATAGCATTTACTCACTGGTTATTGCTGATGAGATTATGAGACCATTATCCAGTGCCATGATGATGTGTAGAATGTGTTTAGTTGTTTTGTGTGATGTCAACTGTTATGCTTCCCCCTGGAAGCTAACTTCTAAGGGCTATTTCAATATGACTTGCTGTAATTAA 1488 0.4321 MHSASEAMIQDVGEASERVCKVMMTCPTLGLDTALNQTGVRVSPDLVENVLKRFENAGMPAFRFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVETFCIMMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKLCEPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITFGRLRQLLIKEGREDSIYSLVIADEIMRPLSSAMMMCRMCLVVLCDVNCYASPWKLTSKGYFNMTCCN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01045 495 Gene3D Tetratricopeptide repeat domain 332 468 IPR011990 GO:0005515
Gma06g01045 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Gma06g01045 495 Pfam PPR repeat family 145 190 IPR002885 -
Gma06g01045 495 Pfam PPR repeat family 353 401 IPR002885 -
Gma06g01045 495 Pfam PPR repeat family 285 330 IPR002885 -
Gma06g01045 495 Gene3D Tetratricopeptide repeat domain 245 331 IPR011990 GO:0005515
Gma06g01045 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Gma06g01045 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Gma06g01045 495 TIGRFAM PPR: pentatricopeptide repeat domain 323 349 IPR002885 -
Gma06g01045 495 TIGRFAM PPR: pentatricopeptide repeat domain 183 216 IPR002885 -
Gma06g01045 495 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Gma06g01045 495 TIGRFAM PPR: pentatricopeptide repeat domain 149 175 IPR002885 -
Gma06g01045 495 TIGRFAM PPR: pentatricopeptide repeat domain 114 146 IPR002885 -
Gma06g01045 495 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Gma06g01045 495 TIGRFAM PPR: pentatricopeptide repeat domain 391 424 IPR002885 -
Gma06g01045 495 TIGRFAM PPR: pentatricopeptide repeat domain 217 250 IPR002885 -
Gma06g01045 495 TIGRFAM PPR: pentatricopeptide repeat domain 357 389 IPR002885 -
Gma06g01045 495 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 446 - -
Gma06g01045 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Gma06g01045 495 Pfam PPR repeat 211 242 IPR002885 -
Gma06g01045 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 176 IPR002885 -
Gma06g01045 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Gma06g01045 495 SUPERFAMILY TPR-like 76 378 IPR011990 GO:0005515
Gma06g01045 495 Pfam PPR repeat 114 141 IPR002885 -
Gma06g01045 495 Pfam PPR repeat 253 282 IPR002885 -
Gma06g01045 495 Gene3D Tetratricopeptide repeat domain 175 244 IPR011990 GO:0005515
Gma06g01045 495 Gene3D Tetratricopeptide repeat domain 23 174 IPR011990 GO:0005515
Gma06g01045 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Gma06g01045 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Gma06g01045 495 PANTHER OS03G0761300 PROTEIN 4 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01045 Gma-Chr6 9774240 9776658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01045 127 457 Glycosyltransferase AT1G05670 25.826 8.11e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01045 - - gmx:100790096 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01045 06 9774240 9776658 Gma06g01045 06 9774240 9776658 ECH