Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00966 ATGGAAAACGCCGACGTTTTCTTGGGCTTACACGACTTCCTCGAGCGCATGCGGCAACCCTCCGCCGCTGAATTCGTCAAAGCAATCAAAAGTTTTATTGTTTCGTTTTCAAACAATGCTCCTGATCCCGATAGGGACAGTGCTGCGGTTCAAGCGTTCCTCGCGAAAATGGAAGCGGATTTCAGGGCTCATCCACTTTGGGCTGGTTGCTCCGAAGAGGAACTTGAAAGTGCCGGTGAAGGACTTGAGAAGTATGTTATGACAAAGTTATTTGCTCGTGTATTTGCTTCACTTCCAGATGATGTAAAATTTGATGACCAACTTTCTGAGAAGATGGCTTTGATTCAACAATTTATTCGACCTGAAAATTTGGATATCAAGCCAGTATTTCAGAATGAATCATCATGGTTGCTTGCACAGAAAGAATTACAGAAGATCAACATGTACAAGGCACCCAGGGATAAACTTGTCTGTATTCTGAATTGTTGCAGGGTTATTAGCAACTTGCTACTTAATGCTTCGGTTGCTTCGAGAGAGAATCCTCCAGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTAACCATAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAGAGGTTTAGACATCAATCTCGATTGGTTGCAGAAGCAGCATATTATTTTACAAACATGCTCTCTGCTGAGTCATTCATCTCAAACATCGATGCAAAAGCCATTTCAATGGAGGAAGCTGAGTTTGATGGAAACATGGAATTTGCTCGTGCTATGCTTTCGGGTATTTCAGCTGATACACAAGATCCTGGTTCACCTTATCAAAATGATGGACAGCATCCAAGAGCAGAACCCACTAAGCACAAAGCTTTGAATGATAATAATGACCCTGCACTACGAACTCCATCATCTGTTGCAAAATCAGAAAGCAAGAAAGTGACTTTTGCAAATGAATCATTGATCACAAAAGTTCCATCGCTCTCGGATTTGGAGAATAAAGGGGCAAGTATGATTTTAAAGGAGGATAAGTTGAATGAAGTTTTCGGGGAGTTTCCATATTTGTTTGCTAGTGTAGGTGACCTAATGGTTGGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAAGTATGTCTCTCTTTCCAAAGGGTTAGGAATCTCTCCTACATCTCTTCCACCATCGAATTCCCAAAATAATTCTGAAGACCATGCTGAAACCACAATAGATTCTTCAGACAATGGACCTCTAGATGACAACAGTAAATCAGAAGAATCTATTGATACAACAGATGATAGTTCAGATAAAGTTACACTTGAGGAGCAAAAAATTGAATCCGATCTGCCGAAGGATGACCTTGTTGCTCCTGAGGGTGATCCCCCCTCTTAA 1404 0.4103 MENADVFLGLHDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPDRDSAAVQAFLAKMEADFRAHPLWAGCSEEELESAGEGLEKYVMTKLFARVFASLPDDVKFDDQLSEKMALIQQFIRPENLDIKPVFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASVASRENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNIDAKAISMEEAEFDGNMEFARAMLSGISADTQDPGSPYQNDGQHPRAEPTKHKALNDNNDPALRTPSSVAKSESKKVTFANESLITKVPSLSDLENKGASMILKEDKLNEVFGEFPYLFASVGDLMVGDVEDLLNNYKQLVFKYVSLSKGLGISPTSLPPSNSQNNSEDHAETTIDSSDNGPLDDNSKSEESIDTTDDSSDKVTLEEQKIESDLPKDDLVAPEGDPPS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00966 467 SMART vps9_2 135 254 IPR003123 -
Gma06g00966 467 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Gma06g00966 467 PANTHER BNAC09G47180D PROTEIN 1 407 - -
Gma06g00966 467 SUPERFAMILY VPS9 domain 11 256 IPR037191 -
Gma06g00966 467 MobiDBLite consensus disorder prediction 394 467 - -
Gma06g00966 467 MobiDBLite consensus disorder prediction 422 459 - -
Gma06g00966 467 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 407 IPR045046 GO:0005085|GO:0016192
Gma06g00966 467 MobiDBLite consensus disorder prediction 394 421 - -
Gma06g00966 467 Gene3D VPS9 domain 99 265 IPR037191 -
Gma06g00966 467 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Gma06g00966 467 MobiDBLite consensus disorder prediction 269 310 - -
Gma06g00966 467 Gene3D - 17 97 - -
Gma06g00966 467 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00966 Gma-Chr6 8978093 8987777 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00966 K20131 - gmx:100810958 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00966 06 8978093 8987777 Gma06g00966 06 8978093 8987777 ECH