Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00952 ATGGGCGCATTTTTTAGTGTGGCGAGTACAAAACCTGACCAAAGGGAATGTAGTGAAATCTCTCCAAATGAAGCATGTAAGAGGCAAAGAATGTCACCTACTGTTGATGAAGAGAATCCAAGGCTAATTCCTAATCTCCCTGATGAGTTATCACTTCAGATTATTGCTAGGCTTCCTAGAATTTGTTACTTCAATGTAAGGCTGGTATCAAAGAAGTGGAAGTCAACTATCATGAGTTCTGAATTGTATAAATTAAGAAAAGAACTTGGGACAACTGAAGAGTGGCTATATCTGTTGGTTAAGGTTGGAGAAAATAATCTTCTGTGGTATGCTCTAGATCCTCGTTCTAAGATATGGCAGAGAATGCCTAATATGCCCAATTTTGTTAACAAAGAAGAATCTAAAAAAGGTTCTTCTAGGCTTTGGATGTGGAACATGGTGGAAGGTATAAGAATTGCTGAAGTTATTAGAGGCTTTCTTGGACAGAAGGATGCATTTGATGAAATGCCTTTTTGCGGTTGTGCGATTGGAGCTGTTGATGGATGTGTTTATGTTCTTGGTGGATTCTCTAAGGCTTCAACTATGAGATGTGTCTGGCGGTTTGATCCAATACAAAATACGTGGAGCAAGGTGACTTCTATGTCAGCGGGTCGGGCATACTGTAAGACAGGCATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCTGGATTGGTTCCTCTCCAATCTGCTGAAGTTTTTGACCCCTCTACAGATACATGGTCACATGTACCTAGTATGCCATTCTCTAGAGCTCAAGTATTGCCCAGTGCTTTTTTGGCTGACATGTTAAAGCCTATTGCCACAGGGTTGACCTCATACATGGGAAGATTATGTGTTCCTCAGAGTCTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATCTATGATCCTGAAACTAACTCGTGGATAGAAATGCCTGCTGGAATGGGTGACGGATGGCCTGCGCGGCAGGCAGGTACCAAATTGAGTGTTGTAGTGGATGGTGAATTATATGCTTTTGACCCTTCTAATTCTATGGATAGTGGAAGAATCAAGGTATATGATCAAGGTGAAGACGCTTGGAAAGTAGTTATTGGAAAAGTCCCCATATATGATTCTGCTGATTCAGAGTCTCCATATCTACTTGCTGGTTTCCATGGAAAGCTTCATGTCATTACCAAAGATGCCAATCATGATATTGCGGTTCTGCAGGCTGGCCTGCGCGATAATTTGGATTCTTCACCATCACTCTCAACTCTGTCACAAAGTACATTGCAAGAATCTCCAGAACTGGCTGCCGAATCAGATGCAGCAGTTGTTTGGAGGGTAGTTGCTAGCAGGGATTTTGGGCAGGCTGAACTAGTCAGTTGCCAAGTTATTGATATCTAG 1431 0.42 MGAFFSVASTKPDQRECSEISPNEACKRQRMSPTVDEENPRLIPNLPDELSLQIIARLPRICYFNVRLVSKKWKSTIMSSELYKLRKELGTTEEWLYLLVKVGENNLLWYALDPRSKIWQRMPNMPNFVNKEESKKGSSRLWMWNMVEGIRIAEVIRGFLGQKDAFDEMPFCGCAIGAVDGCVYVLGGFSKASTMRCVWRFDPIQNTWSKVTSMSAGRAYCKTGILNNKLYVVGGVSQGQAGLVPLQSAEVFDPSTDTWSHVPSMPFSRAQVLPSAFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPETNSWIEMPAGMGDGWPARQAGTKLSVVVDGELYAFDPSNSMDSGRIKVYDQGEDAWKVVIGKVPIYDSADSESPYLLAGFHGKLHVITKDANHDIAVLQAGLRDNLDSSPSLSTLSQSTLQESPELAAESDAAVVWRVVASRDFGQAELVSCQVIDI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00952 476 SUPERFAMILY Kelch motif 98 406 IPR015915 GO:0005515
Gma06g00952 476 SMART kelc_smart 182 228 IPR006652 GO:0005515
Gma06g00952 476 SMART kelc_smart 229 279 IPR006652 GO:0005515
Gma06g00952 476 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 3 476 - -
Gma06g00952 476 SMART fbox_2 46 86 IPR001810 GO:0005515
Gma06g00952 476 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 3 476 - -
Gma06g00952 476 Gene3D - 41 96 - -
Gma06g00952 476 SUPERFAMILY F-box domain 40 131 IPR036047 GO:0005515
Gma06g00952 476 Gene3D - 103 385 IPR015915 GO:0005515
Gma06g00952 476 Pfam Kelch motif 218 266 IPR006652 GO:0005515
Gma06g00952 476 Pfam Kelch motif 170 215 IPR006652 GO:0005515
Gma06g00952 476 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Gma06g00952 476 Pfam F-box domain 44 83 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00952 Gma-Chr6 8871157 8874132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00952 46 264 Miscellaneous Gene Families AT4G33900 28.319 1.10e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00952 - - gmx:100806691 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00952 06 8871157 8874132 Gma06g00952 06 8871157 8874132 ECH
Gma04g01002 04 11453123 11453911 Gma06g00952 06 8871157 8874132 GST