Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00821 ATGGATTTAGTGGCACCAACCGAACAGTTTTGCTCATTTCACCCCTTCCACATAACCAGAGCTAGGGTTTCGGATAACACCGTTTCTCGTCCTTTCGTTCTATCTCCTGCTAGTAGTGTTAGTCATCATTTTACAAAACTGAAGGCAACTAGGTCTAGAAAGCGTTTAGAAAACCGCGTTTCTGCGGTTTCGAAGTCCGAAGCTTCTGGCATGAACGGTAGATTGCAACAAATTGTTAGCACCCCAAACGGGGACTTGAATGGCATAGGCATGGAATCTTCTTCGCCCAACGGGGTGAACGGTTCCCGGAGCTTCGAGGAGTTTGCGAGTAACATTCATCTCCGGAAGTTGGTTAGAAATGGAGAGTTGGAGGAAGGGCTTAAGTTTCTTGAGCGCATGATTTACCAAGGGGATATCCCTGATGTCATTGCTTGCACCAGCTTGATTCGCGGGTTTTGCAGGAGTGGAAAGACTAGGAAGGCAACGAGAATCATGGAGATTTTGGAGAATTCTGGTGCTGTTCCTGATGTGATAACTTATAATGTTTTGATTGGTGGTTATTGCAAATCAGGGGAGATAGACAAAGCCTTGCAGGTTTTGGAGCGAATGAGTGTTGCTCCGGATGTTGTTACGTATAACACGATTCTGCGTAGTTTGTGTGATAGCGGGAAGCTGAAGGAGGCAATGGAGGTTCTTGACAGGCAGATGCAGAGGGAGTGTTATCCCGATGTGATTACTTACACGATTTTGATTGAAGCGACTTGTAATGATAGTGGCGTTGGTCAGGCGATGAAGCTGTTGGATGAGATGAGGAAGAAAGGGTGCAAACctgatgtggtcacttacaatgttcttatcaatggtatttgcaaggaggcatgtgtagcactgggagatggatggatgctgagaggctgttag 921 0.4159 MDLVAPTEQFCSFHPFHITRARVSDNTVSRPFVLSPASSVSHHFTKLKATRSRKRLENRVSAVSKSEASGMNGRLQQIVSTPNGDLNGIGMESSSPNGVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEACVALGDGWMLRGC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00821 306 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Gma06g00821 306 PANTHER OS02G0565400 PROTEIN 38 293 - -
Gma06g00821 306 PANTHER ATPASE EXPRESSION PROTEIN 3 38 293 - -
Gma06g00821 306 Pfam PPR repeat family 242 291 IPR002885 -
Gma06g00821 306 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Gma06g00821 306 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Gma06g00821 306 TIGRFAM PPR: pentatricopeptide repeat domain 245 279 IPR002885 -
Gma06g00821 306 TIGRFAM PPR: pentatricopeptide repeat domain 178 204 IPR002885 -
Gma06g00821 306 TIGRFAM PPR: pentatricopeptide repeat domain 144 177 IPR002885 -
Gma06g00821 306 TIGRFAM PPR: pentatricopeptide repeat domain 210 244 IPR002885 -
Gma06g00821 306 Pfam PPR repeat 205 233 IPR002885 -
Gma06g00821 306 Pfam PPR repeat 172 204 IPR002885 -
Gma06g00821 306 Gene3D Tetratricopeptide repeat domain 236 298 IPR011990 GO:0005515
Gma06g00821 306 Gene3D Tetratricopeptide repeat domain 102 235 IPR011990 GO:0005515
Gma06g00821 306 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 206 IPR002885 -
Gma06g00821 306 Pfam PPR repeat 117 137 IPR002885 -
Gma06g00821 306 Pfam PPR repeat 144 171 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00821 Gma-Chr6 7559208 7560219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00821 121 303 Glycosyltransferase AT1G05670 35.450 1.64e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00821 - - gmx:100790449 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00821 06 7559208 7560219 Gma06g00821 06 7559208 7560219 ECH