Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00748 ATGGATCATTTCTATGGCAAGAGAACCCTCCTCAGCCTAATGGACACCGAAAAACCAGAACCGCCACAATCCCCCGTTCACCTTCGCGTCCAAACCCACAGAGAGATAAACGAACAAGACGTTCAGTTTAGTCCTCCAAGACCTTCAACTACTTCCGATGGCATGTTCCCTATGATGATGCCAGATTCACCATGGACACTTTCCCCTCTCCCAACCCCTTCACCTTCTCTTCTTTACCACTGCATTGCTTCTCTCCACCGCCACGAAGGTAACATCTACGCAATCGCAGCTTCTACAAAGGGCTTGGTCTTCACCGGCTCCAACAGCAGTAGAATCCGCGTGTGGAAGCAGCCAGATTGCATGGACAGAGGGTACCTCAAAGCAAGCTCTGGTGAGGTGAGAGCCATTTTGGCTTACAGCAACATGCTTTTCTCGACGCACAAGGATCACAAAATCAGAATATGGACCTTCACCGTTTCAGATAGCTTCAAGTCCAAGAAAGTAGGTACACTCCCTAGAAAAACCTCTATTCTTATGTTCCCTTCGAGAGGGAAAAACACGCCAAAGCACAAAGATTCTGTTTCTTGCATGGCTTATTACCACTCCGAGGGTCTCTTGTACACTGGCTCCCACGACAGAACAGTGAAGGCGTGGCGTGTCTCCGACAGAAAATGCGTTGACTCGTTCGTGGCACACGAGGATAACGTCAACGCCATATTGGTGAACCAAGACGATGGTTGTCTTTTCACCGGTTCCTCTGACGGGTCGGTGAAGATATGGAGAAGGGTTTACACTGAAGACTCGCACACTCTCACCATGACTCTCAAGTTCCAACCTTCACCCGTTAACGCTCTTGCATTGAGTTGCTCGTTCAACCACTGTTTCCTCTATTCAGGTTCCTCGGATGGGATGATAAATTTTTGGGAGAAGGAGAGATTGTGTTATAGGTTCAACCACGGAGGGTTCTTGCAGGGTCACCGTTTTGCGGTTCTTTGTTTAGCAACGGTTGGGAACATGTTATTCAGTGGGTCAGAGGATACCACAATTAGGGTTTGGAGGAGAGAGGAAGGGAGTTGCTACCACGAGTGTTTGACGGTTTTGGATGGGCATAGAGGGCCAGTGAGATGCTTGGCTGCGTGCCTTGAGATGGAAAAGGTTGTAATGGGGTTCTTGGTGTATAGTGCTAGTTTGGACCAGACATTTAAGGTATGGAGGATTAAGGTTTTGCCCGATGAAAAGATGTGCATGGACTATAGTCAGTATAGTGACCAGTGTGAAGCTGCCACTAGGGTTAAGATTAGGGACTACGACATGAGCCCGGTTTTGTCTCCTTCCTGGGTCGAGAAGAAGCTTCAAGGTAGCTATTTTCAGTAG 1374 0.4833 MDHFYGKRTLLSLMDTEKPEPPQSPVHLRVQTHREINEQDVQFSPPRPSTTSDGMFPMMMPDSPWTLSPLPTPSPSLLYHCIASLHRHEGNIYAIAASTKGLVFTGSNSSRIRVWKQPDCMDRGYLKASSGEVRAILAYSNMLFSTHKDHKIRIWTFTVSDSFKSKKVGTLPRKTSILMFPSRGKNTPKHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFVAHEDNVNAILVNQDDGCLFTGSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSCSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNMLFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAACLEMEKVVMGFLVYSASLDQTFKVWRIKVLPDEKMCMDYSQYSDQCEAATRVKIRDYDMSPVLSPSWVEKKLQGSYFQ 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00748 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 221 - -
Gma06g00748 457 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 450 IPR045182 -
Gma06g00748 457 SMART WD40_4 222 261 IPR001680 GO:0005515
Gma06g00748 457 SMART WD40_4 119 156 IPR001680 GO:0005515
Gma06g00748 457 SMART WD40_4 78 116 IPR001680 GO:0005515
Gma06g00748 457 SMART WD40_4 316 353 IPR001680 GO:0005515
Gma06g00748 457 SMART WD40_4 360 405 IPR001680 GO:0005515
Gma06g00748 457 SMART WD40_4 268 309 IPR001680 GO:0005515
Gma06g00748 457 SMART WD40_4 181 219 IPR001680 GO:0005515
Gma06g00748 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Gma06g00748 457 Gene3D - 72 320 IPR015943 GO:0005515
Gma06g00748 457 Gene3D - 321 449 IPR015943 GO:0005515
Gma06g00748 457 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Gma06g00748 457 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Gma06g00748 457 PRINTS G protein beta WD-40 repeat signature 340 354 IPR020472 -
Gma06g00748 457 Pfam WD domain, G-beta repeat 322 352 IPR001680 GO:0005515
Gma06g00748 457 Pfam WD domain, G-beta repeat 273 308 IPR001680 GO:0005515
Gma06g00748 457 Pfam WD domain, G-beta repeat 362 404 IPR001680 GO:0005515
Gma06g00748 457 Pfam WD domain, G-beta repeat 224 260 IPR001680 GO:0005515
Gma06g00748 457 Pfam WD domain, G-beta repeat 190 218 IPR001680 GO:0005515
Gma06g00748 457 CDD WD40 81 405 - -
Gma06g00748 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 260 - -
Gma06g00748 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 260 IPR001680 GO:0005515
Gma06g00748 457 PANTHER OS01G0232200 PROTEIN 1 450 - -
Gma06g00748 457 SUPERFAMILY WD40 repeat-like 80 407 IPR036322 GO:0005515
Gma06g00748 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 352 - -
Gma06g00748 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 362 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00748 Gma-Chr6 6776234 6777607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00748 190 409 Miscellaneous Gene Families AT5G08390 23.348 1.24e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00748 - - gmx:100814685 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00748 06 6776234 6777607 Gma06g00748 06 6776234 6777607 ECH
Gma04g00758 04 7133115 7134482 Gma06g00748 06 6776234 6777607 GST