Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00561 ATGGAGATTACCTCTAAGCCTACAGAATTGGATGAGATAGACAGGGCAATATTGAAATTGGAGATGGAAAAGCTCTCTTTGAAAAATGACACTGACAAGGCATCTAAAGAAAGATTAAGTAAGCTCGAAAATGATTTGAGTTTACTTAAACAGAAGCAAAAAGAATTGACAGAACTATGGGACAATGAAAAAGTTCTTACGACTCGGATAAGGTCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCTGAGCGTGATTATGACCTGAACCGTGCTACCGAGCTTAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAACCTAACCGACTTCCGAAAAGAGAGAAAAGTTAGTCTTGCTGTGAAATCTGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTGTCTGATCCAAATCTGCCAATTGCAAGCTTCATGTTCATGGGTCCGACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTTAACACTGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCTGTTTCACGTCTAATTGGAGCCCCTCCCGGCTATGTTGGTTATGAAGAAGGCGGTCAGCTAACTGAAGTGGTCAGGAGAAGACCCTACTCTGTGGTACTATTTGATGAAATAGAGAAGGCACATCATGACGTCTTCAACATCTTGTTACAGTTGTTGGACGATGGAAGGATTACTGATTCTCAAGGAAGGACTATTAGCTTCACAAATTGTGTTGTGATTATGACTTCAAACATTGATGAAAGACAAGTCGTTGAGTTGGCTAGGCAAACATTCCGCCCAGAGTTCATGAATCGCATTGATGAATATATTGTTTTCCAGCCTCTGGATTCAGAACAGATCAGCAAAATAGTGGAGCTCCAGATGGAGCGAGTGAAAAACAGGCTTAAGCAGAAGAAAATTGATCTTCATTACACAGAAGAAGCTGTTAAACTACTTGGTGTACTGGGTTTTGATCCAAATTTTGGAGCTAGACCAGTTAAAAGAGTAATACAACAATTGGTCGAAAATGAAATTGCTATGGGAGTTCTCAGGGGATATTTCAAAGAAGAGGAGTCAATCATCGTTGATGCTGATGTGACTCCATCAGGCAAAGAACGTTCTCCTCTAAATAAACTGCTTATTAAGAAGTTGGACAGCTCTGTTGCGGATGCCATGGTTGTCAATGATTAA 1257 0.4089 MEITSKPTELDEIDRAILKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELTELWDNEKVLTTRIRSIKEEIDRVNLEMEAAERDYDLNRATELKYGTLMSLQRQLEEAEKNLTDFRKERKVSLAVKSVADAIRRSRAGLSDPNLPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTISFTNCVVIMTSNIDERQVVELARQTFRPEFMNRIDEYIVFQPLDSEQISKIVELQMERVKNRLKQKKIDLHYTEEAVKLLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGYFKEEESIIVDADVTPSGKERSPLNKLLIKKLDSSVADAMVVND 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00561 418 ProSitePatterns Chaperonins clpA/B signature 2. 185 203 IPR028299 -
Gma06g00561 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 384 IPR027417 -
Gma06g00561 418 SMART ClpB_D2_small_2 304 398 IPR019489 -
Gma06g00561 418 Coils Coil 32 59 - -
Gma06g00561 418 Gene3D - 118 304 IPR027417 -
Gma06g00561 418 CDD AAA 148 303 - -
Gma06g00561 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 122 IPR027417 -
Gma06g00561 418 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 229 247 IPR001270 GO:0005524
Gma06g00561 418 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 200 218 IPR001270 GO:0005524
Gma06g00561 418 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 155 173 IPR001270 GO:0005524
Gma06g00561 418 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 262 276 IPR001270 GO:0005524
Gma06g00561 418 Gene3D - 305 396 - -
Gma06g00561 418 PANTHER CHAPERONE PROTEIN CLPB4, MITOCHONDRIAL 1 126 - -
Gma06g00561 418 SMART AAA_5 151 305 IPR003593 -
Gma06g00561 418 PANTHER ATP-DEPENDENT CLP PROTEASE 129 417 - -
Gma06g00561 418 PANTHER ATP-DEPENDENT CLP PROTEASE 1 126 - -
Gma06g00561 418 Coils Coil 104 124 - -
Gma06g00561 418 Coils Coil 70 90 - -
Gma06g00561 418 Pfam AAA domain (Cdc48 subfamily) 151 297 IPR003959 GO:0005524|GO:0016887
Gma06g00561 418 Coils Coil 10 30 - -
Gma06g00561 418 PANTHER CHAPERONE PROTEIN CLPB4, MITOCHONDRIAL 129 417 - -
Gma06g00561 418 Pfam C-terminal, D2-small domain, of ClpB protein 304 384 IPR019489 -
Gma06g00561 418 Gene3D - 8 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00561 Gma-Chr6 5013303 5015002 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00561 K03695 - gmx:100782121 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00576 04 5200819 5207897 Gma06g00561 06 5013303 5015002 GST