Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00526 ATGATTTCCACCATGAGTTGGGATGAGAACAACGATGAATTTGAGATCCCTCTCACTCAAACGACAACGGCTTTTCACGCGGCTCTTGCTTCCATTGATGATGATAATAATCAACGGCCGTCGAAAAAACCTAAACGCAAAACGAGCGAGGGTGGTTGCGAAATTGATAACTGCTGCAGCTTGGATTTCATTCCTTCCACCATAGGTTGTGTTTCTGCTTGCAGTGTTCAACCGTTGGGAGAAGAGGACAGTGTTTCTCCTTCTTCTTCTACTGCGTCTTTGTCGGAGCTGAAAACGAAGGGGAATTATCTTCGCAACTCGATAGAGTCGAAGCTGGTGGTTTCGAGAGCCAACGCGCTTAACCGTGCAGATGCAGACTCTGATTCGGAGCTTGATCTGTTGATGAATTTGTGCGATGAGTTGGAGGAAGTAGATAGTTCCGTTCGGTGTCCCCTGTGTGAGGTTGATATTTCGAACTTGACCGAGGAACAGCGGCATCTTCATACCAACAATTGTCTTGACGACGTTGCGGTGGTTCCTGATGATAACGAGAAAGGTGCTCAACAAGTGCCTAAAGTTGCTTCTGTGGTTGATTGGCTACGCGGGCTCGGCTTAAACAAGTATGAAGATGTTTTCGTTAGGGAAGAAGTTGATTGGGACACCTTGCAGTGGCTCACAGAAGAGGATCTCTTAAGCATGGGTATTGCTGCACTTGGGCCGAGAAGAAAGATTGTGCATGCCCTGAGTGAACTTAGAAAAGGAGATGCTGCTGCAAATGAGAAACATGAGGATTCTTCGGCGGAGCCTAGAAGGATTAGAAACCAGAAAGTCAAATTAAAACATGACAAGTCTGAAAGAAAAGTTGATGGCACTGGTAAACCAGTGGCAAACAAATTAATCACTGAATATTTTCCGGGATTTGCTTCCAAAGAAAAGAAAGTTTCTGCCTCTCCCGGAGAACCACAGGAAAAGAAAAACAGTGGCTTGGATTCTGGTCGTAAGCACAAATCAAAAAATACGCCAACAAATAGAAAGCTCCGTGATGTTCCCAAATGGTGTGCCGTCCAAGGAACGCCTTTCCGAGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCTCACTGGTTTCTCACACACTTCCACTTGGACCATTATCAAGGTCTCACCAAGTCATTCAATCATGGAAAGATCTATTGCTCCTCAGTTACAGCTAGACTTGTAAATATGAACATTGGAATTCCATATGATAAATTACATGTTTTGCCTCTGAACCAAAAGGTTGAAATAGCTGGTGTTGATGTGACTTGCTTGGATGCCAACCATTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCAAATGGTAAGGCGGTGCTTCACACGGGTGATTTCCGCTTTAGTGAAGAAATGGCTGTCAATCCTTTAATGCGAATATGTCCTATCAATACTCTGATTCTTGATACAACATACTGCAACCCACAGTATGACTTTCCAAAACAAGAGTCTGTAATACAATTCGTTATTGATGCTGTTCAAGCAGAAACTTTtaatcccaagaccctttttctgatcggcagctatacaattgGCAAAGAAAGATTATTCTTGGAGGTTGCTCGTTCGCTTCGTAAAAAGGTTCACGTTACTGCTGCGAAGTTGCGTATTTTAAAATGTTTGGAATTGAAGGAGGAGGATATGCAGTGGTTCACTTCAAATGAACATGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTGGCGAGCTTCAAAAGATTGAAGCACATATCAAGTCAATATAAGAGTCAGTACAATCTTATAGTTGCTTTCTCTCCCACTGGTTGGACGTTTGGCAAAGGTAAAAAGAAGTCAACGGGAAGGAGATGGCAGCAGGGTACTATTATAAGGTGGTATGAAGTGCCATACAGTGAGCATAGCAGCTTTACAGAACTCAAAGAGTTTGTAAGAGTTGTATCTCCTGATAACATTATACCAAGTGTGAATAATGATGGACCAGAATCTTCTGATGCAATGATTTCTCTGTTGTTATCTTGA 2052 0.4201 MISTMSWDENNDEFEIPLTQTTTAFHAALASIDDDNNQRPSKKPKRKTSEGGCEIDNCCSLDFIPSTIGCVSACSVQPLGEEDSVSPSSSTASLSELKTKGNYLRNSIESKLVVSRANALNRADADSDSELDLLMNLCDELEEVDSSVRCPLCEVDISNLTEEQRHLHTNNCLDDVAVVPDDNEKGAQQVPKVASVVDWLRGLGLNKYEDVFVREEVDWDTLQWLTEEDLLSMGIAALGPRRKIVHALSELRKGDAAANEKHEDSSAEPRRIRNQKVKLKHDKSERKVDGTGKPVANKLITEYFPGFASKEKKVSASPGEPQEKKNSGLDSGRKHKSKNTPTNRKLRDVPKWCAVQGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSVTARLVNMNIGIPYDKLHVLPLNQKVEIAGVDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSEEMAVNPLMRICPINTLILDTTYCNPQYDFPKQESVIQFVIDAVQAETFNPKTLFLIGSYTIGKERLFLEVARSLRKKVHVTAAKLRILKCLELKEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYKSQYNLIVAFSPTGWTFGKGKKKSTGRRWQQGTIIRWYEVPYSEHSSFTELKEFVRVVSPDNIIPSVNNDGPESSDAMISLLLS 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00526 683 SUPERFAMILY Metallo-hydrolase/oxidoreductase 360 665 IPR036866 -
Gma06g00526 683 Pfam DNA repair metallo-beta-lactamase 564 669 IPR011084 -
Gma06g00526 683 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 148 679 - -
Gma06g00526 683 MobiDBLite consensus disorder prediction 36 52 - -
Gma06g00526 683 MobiDBLite consensus disorder prediction 326 345 - -
Gma06g00526 683 CDD SAM_superfamily 195 250 - -
Gma06g00526 683 MobiDBLite consensus disorder prediction 30 52 - -
Gma06g00526 683 CDD SNM1A-1C-like_MBL-fold 336 493 - -
Gma06g00526 683 Gene3D - 496 644 - -
Gma06g00526 683 SMART Lactamase_B_5a 220 495 IPR001279 -
Gma06g00526 683 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 148 679 - -
Gma06g00526 683 Pfam SAM domain (Sterile alpha motif) 192 252 IPR001660 GO:0005515
Gma06g00526 683 SMART SAM_4 188 254 IPR001660 GO:0005515
Gma06g00526 683 MobiDBLite consensus disorder prediction 311 345 - -
Gma06g00526 683 Gene3D - 356 666 IPR036866 -
Gma06g00526 683 SUPERFAMILY SAM/Pointed domain 192 253 IPR013761 -
Gma06g00526 683 Gene3D - 187 265 IPR013761 -
Gma06g00526 683 MobiDBLite consensus disorder prediction 253 292 - -
Gma06g00526 683 ProSiteProfiles SAM domain profile. 191 254 IPR001660 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00526 Gma-Chr6 4461985 4467548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00526 194 248 Glycosyltransferase AT3G07170 49.091 2.12e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00526 K15340 - gmx:100816321 1364.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00526 06 4461985 4467548 Gma06g00526 06 4461985 4467548 ECH