Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00398 ATGTCGTCGCAACGATCATCATCATCTGTGTTCGACAACGATCAGTCTCCGACGTTGTTGACGTCGTCTCAGCAACCCTTGGCCATGCCCCGGTTCTTGTCGCAAACCCAAAACCCTGGTCAAACCCTAGAAGACGTTTTTTCTCGTCTCTCTGTCTCCGCGTCTCCCTTCAACTACCCACCTTCTGATTTCTCCGCCGGTAGCTCTTACGGCGTCAAAACCCCCTCAAAGATTCTTCCTTGTAACGGTTGGGGTCATGGGGTTACCACTCTTCAAAGTTCCAATCTTTGGCACCCCGCATTCACCTCCAACAATTATTCTTATTATGATGATGGTTTTGTCGATTCCAAACCTTTGGTGAGGCAAAGAGAAAAAACCCCCACATTTGGTGGAGGTGCTTTTCCCGTTTTTCCACTCTCCAATGGGATGCAACAGAAAACCCCTGATGATGCTGGTTTCTTGTACGGGTTTTTGGGTGGTAATAACGGGTCCAATAATCTGGGGTTTAGTGGCAACGAAAGGCGCCTCCGATGGTTCAATGATTTGCGGGGGAGGGTTCTGTTGTTGGCTACGGATCAACATGAGTGTAGGACTTTGCAGGAGACAATGAGAAAATTGACTAGAGAAGAGTTTTATATCATCTTCTTGGAGCTGATCAATCACGTGACCGATTTGATGGTTGATCCCTTTGGGAACTATGTTGTTCAAAGAATGGTGGAAATCTGCACTGAAGAGCAGCTGAGTCAGATCGTTTTGAGCTTGGCTCAGTGTAATTTTCAGTTGGTCAGAATTTGTCTAAGTGCGCATGGAATCCGGGGTGTTGAGAAACTATTGGAGCGTGTTACAACCCAAGAGCAACGAGATCTTGTTTTGTCAGCTCTTTGCCCCGGTGCTGCTATATTGGCCAAGGATGTGAATGGTCATCGGGTGCTTCTGCATTGTCTAAAACAATTCTCTGGAGAAGACAATGAGAATCTTCTGAATGTTGTGGCAAACAAGTGCTTTGAAATTGCAACAGATAAGACTGGGTGTGTTGTGCTGCAGCAATGCATTAACCATGCACAGGGAGAAACAAAACAGAAGCTGCTTGATGCTATCATATTACATGTTTCACTCTTAGCAGAAGACTGTTACGGCAACTATGTTGTGCAACATTTGTTGTCGCTGAAAGTACCAGGAGTTGCAGAATCTCTACTCATACAGCTTAAAGGAAGATTTTTCTATCTTGCCTGCAACAAATATGGGAGTAATGTAGTGGAGAGGTTCCTCCAAGACTCGGGTGAAAAGCATTCGACATCTATTGTTTTGGAGTTGCTCCACAATCCAAATGTTGCAATGCTTCTTGTGGATCCCTATGGAAATTATGTCATCAAATCAGCACTATCAGCATCTAAGGGTCATGTTCGGAATCGCTTGGAGCGACTGATCAAACTAAATTCCCTGATTATGCGGAGCAACCTCTATGGGAAGAAGTTACTTGCTTGGTTTGAAAAGGGGAAAATATAA 1506 0.4482 MSSQRSSSSVFDNDQSPTLLTSSQQPLAMPRFLSQTQNPGQTLEDVFSRLSVSASPFNYPPSDFSAGSSYGVKTPSKILPCNGWGHGVTTLQSSNLWHPAFTSNNYSYYDDGFVDSKPLVRQREKTPTFGGGAFPVFPLSNGMQQKTPDDAGFLYGFLGGNNGSNNLGFSGNERRLRWFNDLRGRVLLLATDQHECRTLQETMRKLTREEFYIIFLELINHVTDLMVDPFGNYVVQRMVEICTEEQLSQIVLSLAQCNFQLVRICLSAHGIRGVEKLLERVTTQEQRDLVLSALCPGAAILAKDVNGHRVLLHCLKQFSGEDNENLLNVVANKCFEIATDKTGCVVLQQCINHAQGETKQKLLDAIILHVSLLAEDCYGNYVVQHLLSLKVPGVAESLLIQLKGRFFYLACNKYGSNVVERFLQDSGEKHSTSIVLELLHNPNVAMLLVDPYGNYVIKSALSASKGHVRNRLERLIKLNSLIMRSNLYGKKLLAWFEKGKI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00398 501 MobiDBLite consensus disorder prediction 1 25 - -
Gma06g00398 501 CDD Pumilio 184 494 IPR033712 GO:0003723
Gma06g00398 501 ProSiteProfiles Pumilio RNA-binding repeat profile. 438 477 IPR001313 GO:0003723
Gma06g00398 501 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 129 495 - -
Gma06g00398 501 Pfam Pumilio-family RNA binding repeat 301 330 IPR001313 GO:0003723
Gma06g00398 501 Pfam Pumilio-family RNA binding repeat 333 367 IPR001313 GO:0003723
Gma06g00398 501 Pfam Pumilio-family RNA binding repeat 369 387 IPR001313 GO:0003723
Gma06g00398 501 Pfam Pumilio-family RNA binding repeat 261 294 IPR001313 GO:0003723
Gma06g00398 501 Pfam Pumilio-family RNA binding repeat 443 468 IPR001313 GO:0003723
Gma06g00398 501 Pfam Pumilio-family RNA binding repeat 185 219 IPR001313 GO:0003723
Gma06g00398 501 Pfam Pumilio-family RNA binding repeat 221 251 IPR001313 GO:0003723
Gma06g00398 501 Pfam Pumilio-family RNA binding repeat 406 439 IPR001313 GO:0003723
Gma06g00398 501 Gene3D - 168 500 IPR011989 -
Gma06g00398 501 SUPERFAMILY ARM repeat 179 497 IPR016024 -
Gma06g00398 501 ProSiteProfiles Pumilio RNA-binding repeat profile. 401 437 IPR001313 GO:0003723
Gma06g00398 501 ProSiteProfiles Pumilio RNA-binding repeat profile. 217 253 IPR001313 GO:0003723
Gma06g00398 501 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 159 500 IPR033133 GO:0003723
Gma06g00398 501 Coils Coil 189 209 - -
Gma06g00398 501 ProSiteProfiles Pumilio RNA-binding repeat profile. 328 364 IPR001313 GO:0003723
Gma06g00398 501 PANTHER PUMILIO HOMOLOG 15 129 495 - -
Gma06g00398 501 SMART pum_5 365 400 IPR001313 GO:0003723
Gma06g00398 501 SMART pum_5 401 436 IPR001313 GO:0003723
Gma06g00398 501 SMART pum_5 329 364 IPR001313 GO:0003723
Gma06g00398 501 SMART pum_5 217 252 IPR001313 GO:0003723
Gma06g00398 501 SMART pum_5 256 292 IPR001313 GO:0003723
Gma06g00398 501 SMART pum_5 293 328 IPR001313 GO:0003723
Gma06g00398 501 SMART pum_5 439 474 IPR001313 GO:0003723
Gma06g00398 501 ProSiteProfiles Pumilio RNA-binding repeat profile. 365 400 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00398 Gma-Chr6 3432853 3435482 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00398 - - gmx:100795545 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00398 06 3432853 3435482 Gma06g00398 06 3432853 3435482 ECH