LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma06g00102	ATGGCTTCTGCTTGTGTGACCCTGAAAGCCAATACCCATTTAGCAAACTCTGAGAAAGGCTTTCTTGGAGAAAGAATAAAAGGTGGCTTCAACAACAGTGCCTTGGTGATGAATCAGTTGGCTATACGTTCTAGAAGCCACAAGAGGGTGAAACATGGTGTTGGTGTTGTATCTTCTGTTCTCACATCAAACAATGCCAAAGAATCACTGACCTTGCAAGTGCCTTCCTTTCTGAGAAGAAGAGCTGATCCAAAAAATGTTGTTTCCATCATATTGGGAGGCGGACCTGGGACACAACTCTTTCCTCTCACCAAACGTGCTGCCACACCTGCCGTTCCTGTGGGTGGATGCTACAGGCTTATAGACATCCCTATGAGCAACTGTCTCAACAGTGGCATCAACAAAATATTTGTGCTGACCCAGTTCAACTCTGCATCCCTCAACCGCCACATCGCCCGCACCTATTTTGGAAATGGCATTAACTTTGGGGATGGGATTGTGGAGGTTCTGGCGGCTACTCAAACACCAGGAGAGGCTGGAAAGAATTGGTTCCAAGGAACTGCAGATGCTGTGAGGCAATTCACTTGGGTATTTGAGGATGCCAAGAATACAAATGTTGAGAATGTGTTGATCTTGGCTGGAGATCATCTATATCGAATGGATTACATGGACCTTGTGCAGAGTCACGTGGATAGAAATGCTGATATTACAGTTTCATGTGCTGCCGTGGGTGACAGCCGTGCATCAGATTATGGATTGGTTAAAGTAGATGACAGAGGCCGCATCATTCAATTTTCAGAAAAACCTAAGGGTGATGATCTGAAAGCAATGcaagcagatacctctcttcttgggttgtcatcccaagatgcattagagtcaccatatattgcatctatgggggtttatgtattcaagacagatGTTTTACTCAATCTTCTGAAATGGAGATATCCTACCTCAAATGACTTCGGATCTGAAATCATCCCTGCAGCTGTGAGGGATCACAATGTCCAATCATATTTTTTTGGAGACTATTGGGAAGACATTGGAACAATAAAATCCTTTTACAATGCTAACTTGGCTCTTACTGAAGAGGTTCACAAGTTCGAATTTTATGACCCCAAGATTCCCATTTACACATCTCCAGGATTCTTACCACCAACAAAGATTGACAAATGCCGGATTGTGGATGCTATTATCTCCCATGGATGTTTCCTGCGGGAATGCACAGTTCAACACTCCATTGTGGGTGAACGTTCACGCTTGGATTATGGCGTTGAGGTCCTGGACACTGTAATGATGGGAGCAGACTATTACCAAACTGAATCCGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTCCCAATTGGTATTGGAAGGAATACCAAAATTAGGAACTGTATTATTGACAAGAATGCAAAGATCGGGAAAGATGTCATCATCGCAAACAAAGATGGCGTTCAAGAAGCAGATAGACCAGAAGATGGATTCTACATCCGATCAGGAATCACCATCATAATGGAGAAGGCAACCATAGAAGATGGCACTGTCATATAA	1560	0.4128	MASACVTLKANTHLANSEKGFLGERIKGGFNNSALVMNQLAIRSRSHKRVKHGVGVVSSVLTSNNAKESLTLQVPSFLRRRADPKNVVSIILGGGPGTQLFPLTKRAATPAVPVGGCYRLIDIPMSNCLNSGINKIFVLTQFNSASLNRHIARTYFGNGINFGDGIVEVLAATQTPGEAGKNWFQGTADAVRQFTWVFEDAKNTNVENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGDSRASDYGLVKVDDRGRIIQFSEKPKGDDLKAMQADTSLLGLSSQDALESPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVRDHNVQSYFFGDYWEDIGTIKSFYNANLALTEEVHKFEFYDPKIPIYTSPGFLPPTKIDKCRIVDAIISHGCFLRECTVQHSIVGERSRLDYGVEVLDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIANKDGVQEADRPEDGFYIRSGITIIMEKATIEDGTVI	519

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma06g00102	519	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	298	308	IPR005836	GO:0005978\|GO:0008878
	Gma06g00102	519	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	183	191	IPR005836	GO:0005978\|GO:0008878
	Gma06g00102	519	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	85	480	IPR029044	-
	Gma06g00102	519	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	93	112	IPR005836	GO:0005978\|GO:0008878
	Gma06g00102	519	SUPERFAMILY	Trimeric LpxA-like enzymes	382	519	IPR011004	-
	Gma06g00102	519	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	75	384	IPR029044	-
	Gma06g00102	519	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE	1	519	-	-
	Gma06g00102	519	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	1	519	IPR011831	GO:0005978\|GO:0008878
	Gma06g00102	519	Gene3D	Hexapeptide repeat proteins	385	519	-	-
	Gma06g00102	519	TIGRFAM	glgC: glucose-1-phosphate adenylyltransferase	87	483	IPR011831	GO:0005978\|GO:0008878
	Gma06g00102	519	CDD	ADP_Glucose_PP	90	350	-	-
	Gma06g00102	519	CDD	LbH_G1P_AT_C	387	513	-	-
	Gma06g00102	519	Pfam	Nucleotidyl transferase	89	365	IPR005835	GO:0009058\|GO:0016779

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma06g00102	Gma-Chr6	882590	886257	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma06g00102	K00975		-	gmx:100814910	1036.17

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma06g00102	06	882590	886257	Gma06g00102	06	882590	886257	ECH