Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00086 ATGGACGAAATTTTACGACGTCTTTCTGCGGTGGCCGAGTATCGAAGAAAGTTTTACCTTTGTCAAATAATCCATTACAGAATCCGAGCAGCCAAAAGGGTTTTGCGGGATGCAAAGAAGGAATATGCGACAACTCAGTCCCTGAGGAGGGGTGGCCAACTCGTTACTCTTGTTGAAGGGCCTTATAATGATCACAATCAACGCTTTATAGTAAAATCAAGCAGTGGAGCAGATAGACATATAGTTGGCATTCATAGTAAGGTGGAGAAGGAGAAGCTAGTTCCAGGCACAAGAGTTAGCCTGGATAGGACTACCATGACCATTATGAGAATTCTTCCGCCCCAAGTTGACCCTTTTGTGTATAACATGATTCATGAAGACCCTATAAATGCTAATTACTCTGCACTTAGAGAGCTTACAGAACAGATTCGAGAACACGGGGAATCGATTGAACTGCCTCCTGAGCTTAATCTCAAGGTTATGTGGGACACGGGACATGTTAAGTACGCTGCAGTTGGAGGGCTTTCAGATCAGATTCGACAACTCAGGGAATCGATTGAGCTGCCTTTAACGAATCCTGAGCTTTTTCTCAGGGTTGGAATTGGAATGAAACTCCCCAAGGGTGTTCTTCTTTATGGACCTCCTGGAACTGGCAAGACATTATTAGCAAAAGCAATTTCCTGCAACGTAGATGCTAAATTCTTGAAGGTTGTATCTAGTACTATAATTCATAAATCTATTGGTGAAAGTGCAAGATTAATTAGGGAAATGTTTAAATATGCCCGCAATCATCAGCCTTGCATCATATTCATGGATGAGATTGATGCCATTGCTGGACGACGTTCCAGTAACCGCAAAGGTTCTGATCGTGAAATTCAAAGAACCCTCAAGGAGCTGCTTAACCAGCTGGATGGATTAAATCATCTTGAAAAGGTCAAAATAATTATGGCTACAAATAGGCTTGATGTTCTTGACCCGGCTCTTCTTCGTCATGGTCGAATTGATCGGAAAATTGAAATTACATTACCAAATAGGAAGTCAAGGATGGAAATCTTCAAAATCCATGCAGAAGGAGTTACAAAACGTGGTGAAATTGACTATGAAGCAGTTGTGAAGCTTGCTGAGGGGTTCAATGGTGCTGATCTTCGTAATGTTTGTACTGAAGCTGGTCTGTTTGCTATTCGTGCAGAACGTGATTATGTTATTCATGGAGATTTCATCAAGGGTGTGCGCAAACTGAATGAAGCAAAGAAACTGGAATCAAGCCCCTGA 1272 0.4198 MDEILRRLSAVAEYRRKFYLCQIIHYRIRAAKRVLRDAKKEYATTQSLRRGGQLVTLVEGPYNDHNQRFIVKSSSGADRHIVGIHSKVEKEKLVPGTRVSLDRTTMTIMRILPPQVDPFVYNMIHEDPINANYSALRELTEQIREHGESIELPPELNLKVMWDTGHVKYAAVGGLSDQIRQLRESIELPLTNPELFLRVGIGMKLPKGVLLYGPPGTGKTLLAKAISCNVDAKFLKVVSSTIIHKSIGESARLIREMFKYARNHQPCIIFMDEIDAIAGRRSSNRKGSDREIQRTLKELLNQLDGLNHLEKVKIIMATNRLDVLDPALLRHGRIDRKIEITLPNRKSRMEIFKIHAEGVTKRGEIDYEAVVKLAEGFNGADLRNVCTEAGLFAIRAERDYVIHGDFIKGVRKLNEAKKLESSP 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00086 423 CDD AAA 206 342 - -
Gma06g00086 423 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 163 419 - -
Gma06g00086 423 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 4 160 - -
Gma06g00086 423 Pfam AAA+ lid domain 365 403 IPR041569 -
Gma06g00086 423 Pfam Proteasomal ATPase OB C-terminal domain 60 113 IPR032501 -
Gma06g00086 423 Gene3D - 154 343 IPR027417 -
Gma06g00086 423 Pfam ATPase family associated with various cellular activities (AAA) 209 341 IPR003959 GO:0005524|GO:0016887
Gma06g00086 423 Gene3D - 344 413 - -
Gma06g00086 423 PANTHER - 4 160 - -
Gma06g00086 423 PANTHER - 163 419 - -
Gma06g00086 423 Gene3D - 55 127 IPR012340 -
Gma06g00086 423 ProSitePatterns AAA-protein family signature. 312 330 IPR003960 GO:0005524|GO:0016887
Gma06g00086 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 413 IPR027417 -
Gma06g00086 423 SMART AAA_5 205 344 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00086 Gma-Chr6 769378 772145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00086 167 412 Miscellaneous Gene Families AT3G47060 38.492 1.43e-48 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00086 K03064 - gmx:100817206 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00086 06 769378 772145 Gma06g00086 06 769378 772145 ECH